BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0008.p (481 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic... 125 1e-28 AGl1009 [G] COG1653 ABC-type sugar transport system, periplasmic... 100 9e-21 BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasm... 100 1e-20 lin0762 [G] COG1653 ABC-type sugar transport system, periplasmic... 90 7e-18 mll0854 [G] COG1653 ABC-type sugar transport system, periplasmic... 90 1e-17 >lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 414 Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 108/415 (26%), Positives = 184/415 (44%), Gaps = 43/415 (10%) Query: 73 LNAWVMPNSPKPDADFMKTLDPYLKEHPNVTVKVTVLDWGSAWTKITTAATSGEGPDLLQ 132 LN W M + K +K L + + VKV V+ W +A K+ TA S GPD++Q Sbjct: 37 LNVWAMGDEAKS----LKELAQKFTKDTGIEVKVQVIPWANAHDKLLTAVASKSGPDVVQ 92 Query: 133 LGSTWVPAIASMGGIDKVTDKV--ADVGGAEAFLPAIWKTTSIAGDSEVYGVPWFVDARA 190 +G+TW+P G + +T V + ++ F P KTT D + YGVPW+ + R Sbjct: 93 MGTTWMPEFVEAGALLDITKDVEKSKNMNSDLFFPGSVKTTQF--DGKTYGVPWYAETRV 150 Query: 191 IYYRTDVFKQAGVNPETAFKDWDSFKSALEAVNGQTVDGKKIAALGLPGKNDWNVVHNIF 250 ++YRTD+ K+ G N A K WD A ++ + GK + + D N F Sbjct: 151 LFYRTDLLKKVGYN--EAPKTWDELSDAALKLSKR---GKDMYGFAI----DPNEQTTGF 201 Query: 251 PWIWAAGGDVLSEDNKNVIFNEEKGLKGVMFYTGLAHEGLVDKSSLEKNSSQIESDFGDG 310 + G + +D V FN++ + V + G + L ++SQ S GDG Sbjct: 202 IFGRQNGSPLFDKDGTPV-FNKKPFVDTVTYLDSFIKNGSAPDTDLGLDASQ--SFGGDG 258 Query: 311 KSAVIISGPWLAKNF--ATPKANGGMDDKKAAKNFAVAPLPAGPGGQSTFVGGSELTVFS 368 + +SGPW+ P +G +A A LP +S+ +GG+ L++F Sbjct: 259 IVPMFMSGPWMVNTLKDTAPDIDG---------KWATAVLPKKENNESS-LGGANLSIFK 308 Query: 369 GSKNKEATWELIKYLTSDEAQKTYANVSGQLPTKLSILDAPDL--DANMKAFSEATKYGK 426 S K+ + + Y++ + Q ++ + +P ++ + L D K F E K + Sbjct: 309 YSNKKDDALKFMDYMSQPDVQLSWLKDTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAE 368 Query: 427 TYPSIPQWGPTETALQKHFANIWDIVAGVKGKYSEESVKQELDSAASEVKAIINQ 481 P IPQ+ K + I+ A V+ ++D+ +V+A++ + Sbjct: 369 PMPLIPQFEEIAQLYGKSWEQIYRGGA---------DVQTQMDTFNDQVEALLKK 414 >AGl1009 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 134 Score = 99.8 bits (247), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 0/417 (0%), Positives = 0/417 (0%), Gaps = 42/417 (10%) Query: 69 EPVTLNAWVMPNSPKPDADFMKTLDPYLKEHPNVTVKVTVLDWGSAWTKITTAATSGEGP 128 + + + V + ++ Sbjct: 27 TVSGVPMVTAVSYKSFQELPKAKAPAV---LQKLAQAVAAEGFSGIQINKALSSIDAHQE 83 Query: 129 DLLQLGSTWVPAIASMGGIDKVTDKVA--DVGGAEAFLPAIWKTTSIAGDSEVYGVPWFV 186 + +A G D V G Sbjct: 84 TSGSGRIQTLRVVARQKGAAVRIDAVFNIQAGQIADKDVIRKG-- 141 Query: 187 DARAIYYRTDVFKQAGVNPETAFKDWDSFKSALEAVNGQTVDGKKIAALGLPGKNDWNVV 246 Sbjct: 142 --- 198 Query: 247 HNIFPWIWAAGGDVLSEDNKNVIFNEEKGLKGVMFYTGLAHEGLVDKSSLEKNSSQIESD 306 Sbjct: 199 ------- 251 Query: 307 FGDGKSAVIISGPWLAKNFATPKANGGMDDKKAAKNFAVAPLPAGPGGQSTFVGGSELTV 366 Sbjct: 252 -------- 303 Query: 367 FSGSKNKEATWELIKYLTSDEAQKTYANVSGQLPTKLSILDAPD----LDANMKAFSEAT 422 Sbjct: 304 -- 361 Query: 423 KYGKTYPSIPQWGPTETALQKHFANIWDIVAGVKGKYS-EESVKQELDSAASEVKAI 478 Sbjct: 362 ---------- 408 >BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 398 Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/348 (24%), Positives = 156/348 (44%), Gaps = 38/348 (10%) Query: 98 EHPNVTVKVTVLDWGSAWTKITTAATSGEGPDLLQLGSTWVPAIASMGGIDKVTDKVADV 157 E+P +T+ V+ W K+TT ++G DL +G+ W+ G + + + D Sbjct: 40 ENPGITLNFEVVPWDVLLQKLTTDISAGTNADLSIIGTRWLIDFVQQGIAEPLDGYMNDE 99 Query: 158 GGA---EAFL-PAIWKTTSIAGDSEVYGVPWFVDARAIYYRTDVFKQAGV-NPETAFKDW 212 E FL P++ D + YG+P RA+YY D+F++AG+ NP +W Sbjct: 100 FKGRFIETFLSPSVL-------DGKTYGLPIAASVRAMYYNKDLFEKAGIKNPPA---NW 149 Query: 213 DSFK---SALEAVNGQTVDGKKIAALGLPGKNDWNVVHNIFPWIWAAGGDVLSEDNKNVI 269 D K + ++A+ G+ GL GK V+ + +W+ G ++L++D + + Sbjct: 150 DELKADAAKIKALGGENY------GFGLQGKEIETDVYYYYA-MWSYGTEILNKDGTSGL 202 Query: 270 FNEEKGLKGVMFYTGLAHEGLVDKSSLEKNSSQIESDFGDGKSAVIISGPWLAKNFATPK 329 + L+ Y + +GL +++ F GK ++I+ P+L+ Sbjct: 203 -STPGALEAAKLYKSMIDDGLTQPGVTSYAREDVQNLFKQGKVGMMITAPFLSNQIKEEA 261 Query: 330 ANGGMDDKKAAKNFAVAPLPAGP-GGQSTFVGGSELTVFSGSKNKEATWELIKYLTSDEA 388 N + VA +PAGP G + T+ + +F SKNKE W+++ +L + Sbjct: 262 PN---------LKYGVAAIPAGPTGARGTYGVTDSVIMFQNSKNKEEAWKVLDFLFQKDW 312 Query: 389 QKTYANVSGQLPT--KLSILDAPDLDANMKAFSEATKYGKTYPSIPQW 434 + + G LP + + +D +A++ AF+ + P IP W Sbjct: 313 RAKFTQNEGFLPVNKEEAKMDYYVNNADLAAFTALLPDARFAPVIPGW 360 >lin0762 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 417 Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 89/363 (24%), Positives = 163/363 (44%), Gaps = 35/363 (9%) Query: 90 KTLDPYLKEHPNVTVKVTVLDWGSAWTKITTAATSGEGPDLLQLGSTWVPAIASMGGIDK 149 K +D Y K VK + + + K+ T GE PD++ + + A+ + G+ + Sbjct: 52 KQIDSYNKSQDKYKVKYVMQE--NVEEKLLTGIAGGELPDII-MWDRYQTALYAPKGVLE 108 Query: 150 VTDKVA--DVGGAEAFLPAIWKTTSIAGDSEVYGVPWFVDARAIYYRTDVFKQAGVNPET 207 DK+ D + F K + + ++YG+P D R ++Y + ++AGV P T Sbjct: 109 PLDKLVKEDNVKMDDFYEESVKEMTYS--DKLYGLPLLNDNRILFYNKKLLQEAGVKPPT 166 Query: 208 AFKDWDSFKSALEAVNGQTVDGKKIAALGLPGKNDWNVVHNIFPWIWAAGGDVLSEDNKN 267 WD +A + DG K+ G+ ++ V ++ AGG++++ DNK Sbjct: 167 T---WDELATAAQKTT--KWDGNKMTQAGMSLQD----VGLFNLYLMQAGGELVTPDNKK 217 Query: 268 VIFNEEKGLKGVMFYTGLAHEGLVDKSSLEKNSSQIESDFGDGKSAVIISGPWLAKNFAT 327 FN E+GL+ + ++ + ++ V + + S F GK A+ +GPW ++ Sbjct: 218 TAFNSEQGLEVLNYWDKMQNDLKVYQRGFDDGSDA----FAAGKEAMTYNGPWALADY-- 271 Query: 328 PKANGGMDDKKAAKNFAVAPLPAGPGG-QSTFVGGSELTVFSGSKNKEATWELIKYLTSD 386 +K ++ V P GP G + +GG L + +++K+ W+ +K+ T+ Sbjct: 272 --------NKVENLDYGVVEPPKGPNGDKGAIMGGFGLVMPKQAEHKDGAWDFMKWWTTK 323 Query: 387 -EAQKTYANVSGQLP-TKLSILDAP-DLDANMKAFSEATKYGKTYPSIPQWGPTE-TALQ 442 E +A +SG LP K++ D D N F KY K P++ + E A++ Sbjct: 324 PENGVEFAKISGWLPANKIAAEDEYFTKDPNYSVFVNTMKYAKIRPTVAGYADVEGLAMK 383 Query: 443 KHF 445 F Sbjct: 384 PQF 386 >mll0854 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 430 Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 100/399 (25%), Positives = 176/399 (44%), Gaps = 62/399 (15%) Query: 84 PDADFMK-TLDPYLKEHPNVTVKVTVLDWGSAWTKITTAATSGEGPDLLQLGSTWVPAIA 142 P +F+K + + +P V V++ L WG A+ K T +G+ PD++++ W+ A Sbjct: 42 PRTEFLKKQIAEFEAANPGVKVELISLPWGQAFEKFLTMVQAGDTPDVVEMPERWMGLYA 101 Query: 143 SMGGIDKVTDKVADVGGAEAFLPAIWKTTSIAGDSEVYGVPWFVDARAIYYRTDVFKQAG 202 + ++ + +A A+ + S +++ + +P+ A+++ +FKQAG Sbjct: 102 NNAQLEDLGPYMAKWDDAKTLGERAKQFGSTVNNTQ-FMIPYGYYVNALFWNKKLFKQAG 160 Query: 203 VNPETAFKDWDSFKSALEAVNGQTVDGKKIAALGLPGKNDW---------NVVHNIFPWI 253 ++ A D F D KKI+A +PGK + N +H +F I Sbjct: 161 LDGPPA--TLDEF----------VADSKKISA--IPGKYGYCLRGGPGAFNGMH-MFMNI 205 Query: 254 WAAGGDVLSEDNKNVIFNEEKGLKGVMFYTGLAHEGLVDKSSLEKNSSQIESDFGDGKSA 313 G ++D + I NEE +KG+ + +GL K ++ ++ + F G A Sbjct: 206 AQGKGGYFNKDGTSTI-NEEGSVKGLQMLADMYKDGLAPKDAVSWGFNETVTGFYSGTCA 264 Query: 314 VIISGPWLAKNFATPKANGGMDDKKAAKNFAVAPLPAGPGGQST-FVGGSELTVFSGSKN 372 ++ P A G+ DK +A +FAVAPLP GP G+S +G + +F+ S++ Sbjct: 265 MLNQ---------DPDALLGIADKMSADDFAVAPLPVGPSGKSYPTLGYAGWAMFANSQH 315 Query: 373 KEATWELIKYLTSDEAQKTYANVSGQLPTKLSILDAPDLDANMKA---------FSEATK 423 K+ W+L+ L S + +A G +P I + D D + K S+ +K Sbjct: 316 KDDAWKLMATLLSPKDNLEWAKEVGVVP----IHNGADQDPHFKTEQFKGWFTELSDTSK 371 Query: 424 YGKTYPSIPQWGPTETALQKHFANIWDIVAGVKGKYSEE 462 Y P PT H N+ + V V K +E Sbjct: 372 YEMVTP------PT------HLENLGNFVDQVAIKNFQE 398 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.131 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 34,594,393 Number of extensions: 1534783 Number of successful extensions: 8163 Number of sequences better than 1.0e-05: 55 Number of HSP's gapped: 8106 Number of HSP's successfully gapped: 55 Length of query: 481 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 371 Effective length of database: 25,691,691 Effective search space: 9531617361 Effective search space used: 9531617361 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)