BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0003.p
         (159 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0312 [S] COG1683 Uncharacterized conserved protein                  119   2e-27

>PA0312 [S] COG1683 Uncharacterized conserved protein
          Length = 164

 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/147 (44%), Positives = 89/147 (60%), Gaps = 1/147 (0%)

Query: 2   IIVSSCLAGMKVRYNS-TDCLDETIHQLLDNNRAVAVCPELLGEFSTPREPAEIVGGDGG 60
           ++VS CL G  VRY+  +    + + +     R VA+CPE+ G   TPR PAEI GG GG
Sbjct: 4   VLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGG 63

Query: 61  AVLDGTAKVMDRLGNDVSEMYILGAYKALEQARNAGASIVVLKENSPSCGSSMIYNGAFA 120
            VLD   +V    G DVSE ++LGA  A+E  R     + VLK  SPSCG+   Y+G F 
Sbjct: 64  EVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFN 123

Query: 121 GQKIPGEGVTAALLRRNGIEVISEEQL 147
           G ++ GEGVTAA L+R G+ V +E++L
Sbjct: 124 GNRVAGEGVTAAALKRMGVLVFNEDEL 150


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,854,453
Number of extensions: 502788
Number of successful extensions: 1060
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1059
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 61
Effective length of database: 27,075,699
Effective search space: 1651617639
Effective search space used: 1651617639
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 111 (47.4 bits)