BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0286.0003.p (240 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0820 [TK] COG0745 Response regulators consisting of a CheY-lik... 193 3e-49 CAC0564 [TK] COG0745 Response regulators consisting of a CheY-li... 190 2e-48 BS_ycbL [TK] COG0745 Response regulators consisting of a CheY-li... 183 2e-46 lin2516 [TK] COG0745 Response regulators consisting of a CheY-li... 175 7e-44 SPy0528 [TK] COG0745 Response regulators consisting of a CheY-li... 169 3e-42 >BH0820 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 234 Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 149/233 (63%), Gaps = 2/233 (0%) Query: 3 VQRTVLLVDDNRXXXXXXXXXXXXXGLRILEAYNGAQAWTCIQQESIDLAVLDIMMPELN 62 ++ +LL++D+ G + A++G +A +Q + DL +LD+M+P N Sbjct: 2 IEHKILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRRN 61 Query: 63 GVQLLQLLRAEYKLPVILLSAKNQDSDKILGLRLGADDFISKPFNPLEVVARIHAMLRRT 122 G+ LQ +R + +PV+++SAK+ D DK LGL GADD+I+KPF+ +E+ AR+ A +RRT Sbjct: 62 GIDCLQWIRTKSVVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRT 121 Query: 123 YDFNEPAEPVQDTLGHTSIGELMLDHTDCMLYKAGREIPLTAIEYKLLSTLMNAPGRIFT 182 ++ + ++ ++ I EL+++ + + K G EI LTA E+++L + P ++FT Sbjct: 122 VNYAQASQSAENE--RIKIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFT 179 Query: 183 KKQLFEQVWSEHYYEDANTIMVHISRLRDKVEETPKQPEYIRTIRGLGYKFAK 235 K+QL+ VW++ YY D N I VHI RLR+K+E+TP +P+YI+TI G+GY+ + Sbjct: 180 KEQLYRSVWNDDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRMGE 232 >CAC0564 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 233 Score = 190 bits (482), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 144/233 (61%), Gaps = 5/233 (2%) Query: 4 QRTVLLVDDNRXXXXXXXXXXXXXGLRILEAYNGAQAWTCIQQESIDLAVLDIMMPELNG 63 RTVL+VDD + G +++A NG +A ++ + L +LDIMMP+++G Sbjct: 3 SRTVLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDG 62 Query: 64 VQLLQLLRAEYKLPVILLSAKNQDSDKILGLRLGADDFISKPFNPLEVVARIHAMLRRTY 123 + +R + P+I+LSAK +D DKILGL GADD+ISKPFNPLE++AR+ + +RR Sbjct: 63 ITTCMKIREDKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRRYT 122 Query: 124 DFNEPAEPVQDTLGHTSIGELMLDHTDCMLYKAG-REIPLTAIEYKLLSTLMNAPGRIFT 182 N E + +GE+ ++ TD K G R + LT E+ +L L G +F+ Sbjct: 123 KLNSTYES---NSANIEVGEITIN-TDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFS 178 Query: 183 KKQLFEQVWSEHYYEDANTIMVHISRLRDKVEETPKQPEYIRTIRGLGYKFAK 235 ++++E VW E +Y+ NT+MVHI ++R+K+E+ P++PEYI+T+ G+GYK K Sbjct: 179 TEKIYESVWHEEFYDCHNTVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKIEK 231 >BS_ycbL [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 215 Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 0/228 (0%), Positives = 0/228 (0%), Gaps = 3/228 (1%) Query: 8 LLVDDNRXXXXXXXXXXXXXGLRILEAYNGAQAWTCIQQESIDLAVLDIMMPELNGVQLL 67 + L A ++ +D + L +M L L Sbjct: 1 MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDDSGLTLMQILLTHGHLD 60 Query: 68 QLLRAEYKLPVILLSAKNQDSDKILGLRLGADDFISKPFNPLEVVARIHAMLRRTYDFNE 127 + A + + + L+ + + + Sbjct: 61 HVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEECQPLTPDRWLNEGDTISIG 120 Query: 128 PAEPVQDTLGHTSIGELMLDHTDCMLYKAGREIPLTAIEYKLLSTLMNAPGRIFTKKQLF 187 K + S Sbjct: 121 NVTLQVLHC---PGHTPGHVVFFDDRAKLLISGDVIFKGGVGRSDFPRGDHNQLISSIKD 177 Query: 188 EQVWSEHYYEDANTIMVHISRLRDKVEETPKQPEYIRTIRGLGYKFAK 235 Sbjct: 178 225 >lin2516 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 231 Score = 175 bits (443), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 145/230 (63%), Gaps = 6/230 (2%) Query: 6 TVLLVDDNRXXXXXXXXXXXXXGLRILEAYNGAQAWTCIQQESIDLAVLDIMMPELNGVQ 65 ++L+ DD++ G I +AY+GA+ W +Q++ L +LDIMMPE+NG++ Sbjct: 4 SILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMNGLE 63 Query: 66 LLQLLRAEYKL-PVILLSAKNQDSDKILGLRLGADDFISKPFNPLEVVARIHAMLRRTYD 124 + +L+R L P+++LSAK +D+DKI+GL GADD++ KPFNPLE+ R+ A+LRR Sbjct: 64 VCRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQQ 123 Query: 125 FNEPAEPV-QDTLGHTSIGELMLDHTDCMLYKAGREIPLTAIEYKLLSTLMNAPGRIFTK 183 ++ AEPV QD + IG +++D ++ +E+ LT E+ +L L + PGR+F+ Sbjct: 124 MSQ-AEPVSQDKV---IIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSS 179 Query: 184 KQLFEQVWSEHYYEDANTIMVHISRLRDKVEETPKQPEYIRTIRGLGYKF 233 + +FE++W E + T+MVHIS LRDK+ + I+TI G+GYK Sbjct: 180 EYIFEKIWQEKALGASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKI 229 >SPy0528 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Length = 236 Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 141/235 (60%), Gaps = 2/235 (0%) Query: 5 RTVLLVDDNRXXXXXXXXXXXXXGLRILEAYNGAQAWTCIQQESIDLAVLDIMMPELNGV 64 + +L+VDD + G I+ A++G +A T ++E DL +LD+M+PEL+G+ Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGL 61 Query: 65 QLLQLLRAEYKLPVILLSAKNQDSDKILGLRLGADDFISKPFNPLEVVARIHAMLRRTYD 124 ++ + +R +P+I+LSAK+ + DK++GL +GADD+++KPF+ E++AR+ A LRRT Sbjct: 62 EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 125 FNEPAEPVQDTLG--HTSIGELMLDHTDCMLYKAGREIPLTAIEYKLLSTLMNAPGRIFT 182 + G +IG L + + K G+E+ LT E++LL L N G++ T Sbjct: 122 IETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVMT 181 Query: 183 KKQLFEQVWSEHYYEDANTIMVHISRLRDKVEETPKQPEYIRTIRGLGYKFAKKD 237 ++ L E VW Y+ D T+ V + RLR+K+E+TP +PEYI T RG+GY D Sbjct: 182 REHLLEIVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD 236 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.139 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,645,576 Number of extensions: 647327 Number of successful extensions: 3622 Number of sequences better than 1.0e-05: 370 Number of HSP's gapped: 3310 Number of HSP's successfully gapped: 370 Length of query: 240 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 137 Effective length of database: 26,499,029 Effective search space: 3630366973 Effective search space used: 3630366973 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 114 (48.5 bits)