BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0023.p (322 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 164 2e-40 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 162 7e-40 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 161 2e-39 BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 160 3e-39 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 160 4e-39 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 87/292 (29%), Positives = 165/292 (56%), Gaps = 8/292 (2%) Query: 31 DKMISVTIYIVFSLFAFICVYPFYSIIINTISANDLSAKGEIVFWPKGIHFQNYVDVFKI 90 +++ + IY +FA ICV PF +I + + + + + P Y +F Sbjct: 3 NRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFST 62 Query: 91 PGLWNAFVISIGRTVIGTILTVGASAFLGFMFAQEDMWGKKFWYRFTIITMFFNAGIIPW 150 ++ + ++S+ TVIGT +++ S+ + + ++ D+ G++ + TM F+ G+IP Sbjct: 63 DIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPT 122 Query: 151 YLTMRSLHLTNNFLAYILPSIVAPFFIILVKTFVESTPKELQQAASIDGAGTFTIFYKVI 210 +L ++SL L +++ A ILP+ + F +I++K F ++ P L+++A IDG IF+K++ Sbjct: 123 FLVVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIV 182 Query: 211 LPISKPILATVAIFSAVNQWNSFQDTLLLVTDSKLYSLQFILYNYINQASSLSTMVNLQN 270 LP+S P +AT+++F AV WN++ +L + DS + +Q +L + +S + ++ Sbjct: 183 LPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSGMQGDMSEMG 242 Query: 271 AGSTAIASLSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVKGIIIGAVKG 322 +GS +QT I+M V ++ P+LLVYP Q+ F KG ++G+VKG Sbjct: 243 SGSPP-----PEQT---IKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 162 bits (410), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 161/284 (56%), Gaps = 7/284 (2%) Query: 39 YIVFSLFAFICVYPFYSIIINTISANDLSAKGEIVFWPKGIHFQNYVDVFKIPGLWNAFV 98 Y+ LF+ IC PF I+ + ++ + + + +P Y +F ++ + + Sbjct: 17 YLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFSTDIIFRSLI 76 Query: 99 ISIGRTVIGTILTVGASAFLGFMFAQEDMWGKKFWYRFTIITMFFNAGIIPWYLTMRSLH 158 ISI TV+GT ++ ++ + + +++D+ G++ + TM F+ G+IP +L +RSL Sbjct: 77 ISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFLVVRSLG 136 Query: 159 LTNNFLAYILPSIVAPFFIILVKTFVESTPKELQQAASIDGAGTFTIFYKVILPISKPIL 218 L + + A I+P+ + F +I++K F ++ P+ L+++A IDG IF++++ P+S P + Sbjct: 137 LLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIVFPLSMPAI 196 Query: 219 ATVAIFSAVNQWNSFQDTLLLVTDSKLYSLQFILYNYINQASSLSTMVNLQNAGSTAIAS 278 AT+++F AV WN+F +L + DS ++ +Q +L + +S + + AG Sbjct: 197 ATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSGMQGDLTELGAGFV---- 252 Query: 279 LSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVKGIIIGAVKG 322 + +QT I+M V ++ P+L+VYP Q+ F KG ++G+VKG Sbjct: 253 MPPEQT---IKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 153/286 (53%), Gaps = 13/286 (4%) Query: 39 YIVFSLFAFICVYPFYSIIINTISANDLSAKGEIVFWPKGIHFQNYVDVFKIPGLWNAFV 98 Y LFA +C+ P I ++S + +A ++F P Y +F+ Sbjct: 17 YTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTIANDNFIRSFL 76 Query: 99 ISIGRTVIGTILTVGASAFLGFMFAQED--MWGKKFWYRFTIITMFFNAGIIPWYLTMRS 156 IS+ R V+GT++++GA + ++ED G+KF+ F +ITM FN G++P Y+ + Sbjct: 77 ISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLVPTYMVVTG 136 Query: 157 LHLTNNFLAYILPSIVAPF-FIILVKTFVESTPKELQQAASIDGAGTFTIFYKVILPISK 215 L LTN A +LP + F I+L+ F + PK L+++A IDGA F IF K+ LPIS Sbjct: 137 LGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLKIYLPISV 196 Query: 216 PILATVAIFSAVNQWNSFQDTLLLVTDSKLYSLQFILYNYINQASSLSTMVNLQNAGSTA 275 P +ATV++F+ V WNS+ D ++ D++ Y LQ + L T+V Q+ Sbjct: 197 PAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQ----------TFLQTIVVQQDFSQIT 246 Query: 276 IASLSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVKGIIIGAVK 321 A + +++ I P+L+VYP Q++FVKGI++GA K Sbjct: 247 DAETLRNLSQRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 160/281 (56%), Gaps = 9/281 (3%) Query: 45 FAFICVYPF-YSIIINTISANDLSAKGEIVFWPKGIHFQNYVDVFKIPG-LWNAFVISIG 102 FAF+C++PF Y III+ S L+ G + P F Y ++++ ++ A+ ++I Sbjct: 46 FAFLCIFPFIYVIIISLTSEQSLAMNGYRII-PSEWSFDAYRYLWQMRSEVFRAYGVTIF 104 Query: 103 RTVIGTILTVGASAFLGFMFAQEDMWGKKFWYRFTIITMFFNAGIIPWYLTMRS-LHLTN 161 TV+GT+++V A + +++ +K + TM F+ G++P+Y+ M L L N Sbjct: 105 ITVVGTLMSVSIIALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIVMTQFLGLKN 164 Query: 162 NFLAYILPSIVAPFFIILVKTFVE-STPKELQQAASIDGAGTFTIFYKVILPISKPILAT 220 + A ILP V F+II+++TF + S P+ + ++A IDGAG F IF+K++LP+S P +AT Sbjct: 165 SVWALILPMAVNAFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFFKIVLPLSIPGIAT 224 Query: 221 VAIFSAVNQWNSFQDTLLLVTDSKLYSLQFILYNYINQASSLSTMVNLQNAGSTAIASLS 280 +A+FS + WN + + LL + D KL LQ +L N + L + S + S+ Sbjct: 225 IALFSTLAYWNDWFNALLFIDDPKLVPLQSLLMRIENNLDFIRQNAMLSSQNSALLDSIP 284 Query: 281 TKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVKGIIIGAVK 321 S RM + +I PI L YP FQ++FVKG+ IG VK Sbjct: 285 QD----SARMAMVVIATLPIALSYPFFQKYFVKGLTIGGVK 321 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 93/275 (33%), Positives = 148/275 (53%), Gaps = 9/275 (3%) Query: 48 ICVYPFYSIIINTISANDLSAKGEIVFWPKGIHFQNYVDVFKIPGLWNAFVISIGRTVIG 107 I + PF II + + A+ +PK Y VF P + +SI TV+G Sbjct: 30 ITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVG 89 Query: 108 TILTVGASAFLGFMFAQEDMWGKKFWYRFTIITMFFNAGIIPWYLTMRSLHLTNNFLAYI 167 T + + + + + A+ + G+ I +M F+ G+IP YL ++SL L + + A I Sbjct: 90 TAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALI 149 Query: 168 LPSIVAPFFIILVKTFVESTPKELQQAASIDGAGTFTIFYKVILPISKPILATVAIFSAV 227 LP + PF +I++K F + P+EL+++A IDG +F+++ LP+SKP++AT A+F AV Sbjct: 150 LPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAV 209 Query: 228 NQWNSFQDTLLLVTDSKLYSLQFILYNYINQASSLSTMVNLQNAGSTAIASLSTKQTTTS 287 WN F LL + DS + LQ +L Q + LS + G T ++ +Q Sbjct: 210 GIWNDFFHALLYINDSAKWPLQMVL----RQVTILSDLT--ATNGDTMQNAVPPEQ---G 260 Query: 288 IRMTVTIIVVAPILLVYPIFQRFFVKGIIIGAVKG 322 I++ V +I PIL VYP Q+ F KG++IG+VKG Sbjct: 261 IKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVKG 295 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,561,542 Number of extensions: 792082 Number of successful extensions: 2927 Number of sequences better than 1.0e-05: 154 Number of HSP's gapped: 2723 Number of HSP's successfully gapped: 154 Length of query: 322 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 216 Effective length of database: 26,153,027 Effective search space: 5649053832 Effective search space used: 5649053832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)