BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0022.p (304 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 203 2e-52 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 185 9e-47 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 171 1e-42 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 164 2e-40 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 160 3e-39 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 182/308 (59%), Gaps = 10/308 (3%) Query: 2 RSYSMKTNSIRKFLYIS--PFMVLLAVFAYYPLYGWVYAFFDYMPPIPLSQAPFVGLKWF 59 R + T +K+LY+ PF+ + VF Y+PL+GW AF ++ P + + +VGL+ F Sbjct: 17 RKKILTTLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHF 76 Query: 60 RSLVENQVKVDQLLQVIKNTFGMS--GLSILFSWLPMIFAIFLTEIKAVRFRKFIQTVTT 117 L ++ ++ V++NT MS GL + F+ +P++FA+ L E++ + F++ +QTV+ Sbjct: 77 IELFQD----NRFYLVLRNTLAMSIMGLIVGFT-MPILFAVLLNEVRHMVFKRTVQTVSY 131 Query: 118 LPNFISWVLVYSLAFSMFSSEG-VVNGFLSQLGLTDSPVLFLQNSDHVWITMWIWATWKT 176 LP+F+SWV+V + M S +G +VN L G D PV F+ + W+ + + WK Sbjct: 132 LPHFVSWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKE 191 Query: 177 LGWSAILYIAAIMSIDESLYEAAYVDGATRMQVIRHVVLPSMLPTYFVLLMLQIASFLNN 236 +GW++I+++AA+ ID LYEAA VDGA+R + I H+ LP + PT V+L+L I + Sbjct: 192 MGWNSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAI 251 Query: 237 GLEQYFVFQNAFNKDTIQVLDLYVYNLAMGGGSYSVSVAISMLKSLISVVLLFSVNGLSK 296 G E+ F+ N D +VLDLY N +G G YS AI + S++ ++LLF NG+ K Sbjct: 252 GFEKQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFK 311 Query: 297 MLRGEGIV 304 + ++ Sbjct: 312 RFTNQSVM 319 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 185 bits (469), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 98/286 (34%), Positives = 168/286 (58%), Gaps = 7/286 (2%) Query: 19 PFMVLLAVFAYYPLYGWVYAFFDYMPPIPLSQAPFVGLKWFRSLVENQVKVDQLLQVIKN 78 PF++ L +F Y PLYGW AF D+ P P+ + G K F L + + +V++N Sbjct: 54 PFLIWLIIFRYVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTD----PRFFEVLRN 109 Query: 79 TFGMSGLSILFSWLPMI-FAIFLTEIKAVRFRKFIQTVTTLPNFISWVLVYSLAFSMFSS 137 T MS ++++ ++ I AI L E++ + F++ +QT++ +P+F+SWV+ L + S Sbjct: 110 TLAMSLINLVLGFVTAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAALSI 169 Query: 138 E-GVVNGFLSQLGLTDSPVLFLQNSDHVWITMWIWATWKTLGWSAILYIAAIMSIDESLY 196 E G++N L +LG+ P+++L ++ W + WK +GW+ I+Y+AAI ID Y Sbjct: 170 ENGIINIVLMKLGMISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQY 229 Query: 197 EAAYVDGATRMQVIRHVVLPSMLPTYFVLLMLQIASFLNNGLEQYFVFQNAFNKDTIQVL 256 EAA +DGATR+Q I ++ LP M P +LL++ + L +G E ++ N N D + L Sbjct: 230 EAAEIDGATRLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLMNPMNMDFAENL 289 Query: 257 DLYVYNLAMGGGSYSVSVAISMLKSLISVVLLFSVNGLSKMLRGEG 302 D++V + G++S++ A + K+++S + LFS N ++K L GE Sbjct: 290 DIFVLRYGINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRL-GEA 334 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 91/280 (32%), Positives = 164/280 (58%), Gaps = 8/280 (2%) Query: 26 VFAYYPLYGWVYAFFDYMPPIPLSQAPFVGLKWFRSLVENQVKVDQLLQVIKNTFGMSGL 85 +F Y P++G + AF DY P + ++ +VG +F+ N ++++NT ++ L Sbjct: 44 IFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNP----DFFRLLRNTLMLASL 99 Query: 86 SILFSWLPMIFAIFL-TEIKAVRFRKFIQTVTTLPNFISWVLVYSLAFSMFSSE-GVVNG 143 +LF++ + L E++ +++ IQT +P+F+SW +V S+ F F+ + GV+N Sbjct: 100 DLLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINK 159 Query: 144 FLSQLGLTDSPVLFLQNSDHVWITMWIWATWKTLGWSAILYIAAIMSIDESLYEAAYVDG 203 + + LT + FL ++D + + + WK GW IL++AA+ ++D+ YEAA +DG Sbjct: 160 LI--MSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDG 217 Query: 204 ATRMQVIRHVVLPSMLPTYFVLLMLQIASFLNNGLEQYFVFQNAFNKDTIQVLDLYVYNL 263 A R + + H+ LP++ T VLL+L+I SFLN G EQ ++ N+ N+ + D YVY + Sbjct: 218 AGRFRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMM 277 Query: 264 AMGGGSYSVSVAISMLKSLISVVLLFSVNGLSKMLRGEGI 303 + G+YS S A+ + KS++ ++L+F N ++K EG+ Sbjct: 278 GITQGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGL 317 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 104/306 (33%), Positives = 174/306 (56%), Gaps = 10/306 (3%) Query: 2 RSYSMKTNSIRKFLY--ISPFMVLLAVFAYYPLYGWVYAFFDYMPPIPLSQAPFVGLKWF 59 R +K K+LY I P +V +F Y P++G + AF DY P + ++ + +VG K F Sbjct: 25 RQQKLKRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHF 84 Query: 60 RSLVENQVKVDQLLQVIKNTFGMSGLSILFSW-LPMIFAIFLTEIKAVRFRKFIQTVTTL 118 L Q+++NT + +++F + +P+I A+ L EI+ + F++F+QT+ + Sbjct: 85 ERLFTEPT----FFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYI 140 Query: 119 PNFISWVLVYSLAFSMFSSEG-VVNGFLSQLGLTDSPVLFLQNSDHVWITMWIWATWKTL 177 P+F+SWV+V SL + +F+++G V+N + +T V FL + D + W+ Sbjct: 141 PHFMSWVIVVSLTYVLFTTDGGVINEII--YSITGKNVNFLMSEDWFRPLYILQVIWREA 198 Query: 178 GWSAILYIAAIMSIDESLYEAAYVDGATRMQVIRHVVLPSMLPTYFVLLMLQIASFLNNG 237 GW+ I+Y AAI +ID SLYEAA +DGA R + I H+ LP++ VLL+L+I L G Sbjct: 199 GWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELG 258 Query: 238 LEQYFVFQNAFNKDTIQVLDLYVYNLAMGGGSYSVSVAISMLKSLISVVLLFSVNGLSKM 297 E F+ NA N++ ++ D YVY + G +S S A+ KS++ ++++ N L+K Sbjct: 259 FEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKK 318 Query: 298 LRGEGI 303 EG+ Sbjct: 319 FGEEGV 324 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 98/272 (36%), Positives = 159/272 (58%), Gaps = 8/272 (2%) Query: 19 PFMVLLAVFAYYPLYGWVYAFFDYMPPIPLSQAPFVGLKWFRSLVENQVKVDQLLQVIKN 78 P +VL +F Y P++G V AF DY P + + + +VGL+ F ++ E D QVI N Sbjct: 36 PALVLALIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFE----YDYAKQVIWN 91 Query: 79 TFGMSGLSILFSWL-PMIFAIFLTEIKAVRFRKFIQTVTTLPNFISWVLVYSLAFSMFSS 137 T +S L ++F + P+I A+ L E+ + ++ +QT+ LP F+SWV++ + + S Sbjct: 92 TLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSP 151 Query: 138 EG-VVNGFLSQLGLTDSPVLFLQNSDHVWITMWIWATWKTLGWSAILYIAAIMSIDESLY 196 +G +VN L G+ P+ FL ++D T+ I WK G++ I+++AAI +++ +LY Sbjct: 152 DGGIVNQALGLFGI--DPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLY 209 Query: 197 EAAYVDGATRMQVIRHVVLPSMLPTYFVLLMLQIASFLNNGLEQYFVFQNAFNKDTIQVL 256 EAA VDGA R + H+ LP+MLP V+ L + + LN G +Q F N T ++ Sbjct: 210 EAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQIFNLYNPLVYQTGDII 269 Query: 257 DLYVYNLAMGGGSYSVSVAISMLKSLISVVLL 288 D YVY +++ G +S A+ + KSLIS+VL+ Sbjct: 270 DTYVYRVSLVNGDFSYGTAVGLFKSLISLVLI 301 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,144,722 Number of extensions: 824524 Number of successful extensions: 2914 Number of sequences better than 1.0e-05: 133 Number of HSP's gapped: 2860 Number of HSP's successfully gapped: 133 Length of query: 304 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 198 Effective length of database: 26,153,027 Effective search space: 5178299346 Effective search space used: 5178299346 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)