BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0016.p (507 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC2802 [G] COG3507 Beta-xylosidase 367 e-101 BH3683 [G] COG3507 Beta-xylosidase 304 3e-82 CC0989 [G] COG3507 Beta-xylosidase 288 2e-77 CAC3452 [G] COG3507 Beta-xylosidase 262 8e-70 BS_xynB [G] COG3507 Beta-xylosidase 249 6e-66 >CC2802 [G] COG3507 Beta-xylosidase Length = 548 Score = 367 bits (941), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/506 (40%), Positives = 286/506 (56%), Gaps = 22/506 (4%) Query: 3 GFYPDPSVCRVGGDYYLVTSTFAYFPGVPIFHSRDLVNWKQIGNVLDRPSQLNLQGAGHS 62 GFYPDPSV R G D+YLV STFA+FPG+P+FHS DLV+W+QIGN +DRP L+ + G S Sbjct: 42 GFYPDPSVTRAGKDFYLVNSTFAWFPGLPVFHSTDLVHWEQIGNAIDRPGMLDFKRLGLS 101 Query: 63 QGIFAPTIRYHEGKFYMITTNVTHGGNFVVTATDPAGPWSEPHFIQGAVGIDPTIFFDDD 122 + +FAP I+ H+G FY++ T V GGN+++TA DP GPWS+P ++ GIDP+IFFDD+ Sbjct: 102 RAVFAPAIQAHQGMFYILNTCVDCGGNYLITAKDPKGPWSDPVWLPKVGGIDPSIFFDDE 161 Query: 123 ---GRAYYLGTRPNSTGVRYDGNWEVWIQELDLETMELAGESYVLWRGAM---VDVIWPE 176 GR + + Y G+ +WI E D +T G + +L + IWPE Sbjct: 162 DGGGRVWIVNNDGPPGPPEYPGHRALWIHEYDPKTQTTVGPATLLLDKGVDPATKPIWPE 221 Query: 177 GPHLYKKDGIYYLMIAEGGTGLNHAVTVARSQKLTEGYAGNPNNPIITHRHLGKH--YPI 234 GPH+ KKDG YYL AEGGT H+ V RS+ +T Y NNPI+T R L + PI Sbjct: 222 GPHILKKDGWYYLTAAEGGTAEGHSQVVLRSKSVTGPYVPYTNNPILTQRDLPRDRPLPI 281 Query: 235 INVGHADLVQAEDGQWFMVMLASRPYGGGYSNLGRETFLASVTWEDGWPVVNE-GRGI-- 291 + GHAD+V DG+W+ LA RPYG N GRETFL V W+DGWPV+ E G+ I Sbjct: 282 TSAGHADIVDTPDGKWWATFLAVRPYGDDLYNTGRETFLLPVEWKDGWPVILENGKTIPY 341 Query: 292 -LEEQGVMGLTPVPVE-PQLRCDHFDSDKLALKWMFLRNPQADLYSLTERKGYLRLKLKP 349 + + L P P + F+ +L + WM +R P +S+ + G L L+ + Sbjct: 342 VADAPKLPALKTAPTSGPFKAAETFEGPELPMSWMTMRIPSKRWWSV--KDGTLSLEARK 399 Query: 350 QTFKDQDNLSFVCLRQQHFDYTAAAVMEFEARSIHEAAGLAVIQNDKFHIRFERVLHDGR 409 + S RQQH + + + + F+ ++ + AGL +QND F+ V G+ Sbjct: 400 DRVGGHEQPSIWARRQQHMNASVSTTVRFDPKADGDKAGLVAVQNDDFYWFVGLVQAGGK 459 Query: 410 QALRVVTCVNGGE----TNVAQTDV---EAQRLYLKMAARGQELSFYYSTDGDQYHLVAE 462 +RV + + VA+ V Q L LK+AARG L F Y+T Q+ + Sbjct: 460 TLVRVEKRTSSKDPLDGAVVAEKPVSLKSGQSLDLKIAARGGALDFAYATAPGQWQTLKA 519 Query: 463 HVDTSSLSTEAAGGFVGCCIGMYCTG 488 D ++LST+ AGGFVG +G+Y G Sbjct: 520 DADGTTLSTKVAGGFVGTMLGVYAHG 545 >BH3683 [G] COG3507 Beta-xylosidase Length = 528 Score = 304 bits (778), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 186/524 (35%), Positives = 285/524 (54%), Gaps = 30/524 (5%) Query: 1 MPGFYPDPSVCRVGGDYYLVTSTFAYFPGVPIFHSRDLVNWKQIGNVLDRPSQLNLQGAG 60 +PGF+PDPS+ RVG DYY+ TSTF +FPGV I HSRDL +W+ + + L R SQL+++G Sbjct: 10 LPGFHPDPSIVRVGDDYYIATSTFEWFPGVRIHHSRDLKHWRFVSSPLTRTSQLDMKGNM 69 Query: 61 HSQGIFAPTIRYHEGKFYMITTNVT--HGG-----NFVVTATDPAGPWSEPHFIQGAVGI 113 +S GI+AP + YH+G FY+I T+V HG N++VTA + GPWS+P ++ + G Sbjct: 70 NSGGIWAPCLSYHDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPIYLNSS-GF 128 Query: 114 DPTIFFDDDGRAYYLGTRPNSTGVRYDGNWE---VWIQELDLETMELAGESYVLWRGAMV 170 DP++F DDDGR + + N GN + +QE +L G +++G Sbjct: 129 DPSLFHDDDGRKWLV----NMIWDYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYKG--T 182 Query: 171 DVIWPEGPHLYKKDGIYYLMIAEGGTGLNHAVTVARSQKLTEGYAGNPNNPIITHRHLGK 230 D+ EGPHLYKKDG YYL++AEGGT HA T+ARSQ + Y +P+ P++T + Sbjct: 183 DIQLTEGPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPYETDPSYPLVTSTGQPE 242 Query: 231 HYPIINVGHADLVQAEDGQWFMVMLASRPYGGGYSNLGRETFLASVTW-EDGWPVVNE-G 288 + GH LV+ ++G+W++ L RP G Y LGRET + V W EDGW + + G Sbjct: 243 -LALQKAGHGSLVETQNGEWYLAHLCGRPLKGKYCTLGRETAIQKVNWTEDGWLRIEDGG 301 Query: 289 RGILEEQGVMGLTPVPVEPQLRCDHFDSDKLALKWMFLRNPQADLY-SLTERKGYLRLKL 347 L E L P E + D FD+ +L +W LR P + SL ER G+LRL+ Sbjct: 302 NHPLREVTAPDLPEHPFEKEPELDDFDAPQLHHQWNTLRIPADPSWCSLEERPGHLRLR- 360 Query: 348 KPQTFKDQDNLSFVCLRQQHFDYTAAAVMEFEARSIHEAAGLAVIQNDKFHIRFERVLHD 407 ++ + S V RQQ F +E++ S AGL + + + H+ H+ Sbjct: 361 GMESLTSVHSQSLVARRQQSFHCEVETKLEYQPESFQHMAGLVIYYDTEDHVYLHVTWHE 420 Query: 408 GR-QALRVVTCVNGGETNVAQTDV---EAQRLYLKMAARGQELSFYYSTDGD-QYHLVAE 462 + + L+++ G + + + E + +YLK + + Y+ +G+ ++ V Sbjct: 421 EKGKCLQIIQTKGGNYDELLASPIPLAEEKAVYLKGRIHRETMHLYFKQEGEAEWQPVGP 480 Query: 463 HVDTSSLSTEAAGG--FVGCCIGMYCTGNGTATDNVADFDWFEY 504 +D + +S ++A F G +GM T + + T ADFD+F Y Sbjct: 481 TIDVTHMSDDSAKQVRFTGTFVGM-ATQDLSGTKKPADFDYFRY 523 >CC0989 [G] COG3507 Beta-xylosidase Length = 546 Score = 288 bits (737), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 203/540 (37%), Positives = 283/540 (52%), Gaps = 55/540 (10%) Query: 3 GFYPDPSVCRVGGDYYLVTSTFAYFPGVPIFHSRDLVNWKQIGNVLDRPSQLNLQGAGHS 62 GF PDPS+ RVG DYY+ TSTF +FPGV I HSRDL NW+ IG L RPSQLN+ G Sbjct: 13 GFNPDPSIVRVGEDYYIATSTFEWFPGVQIHHSRDLRNWRLIGRPLRRPSQLNMMGDPDG 72 Query: 63 QGIFAPTIRYHEGKFYMITTNVTHGG----------------NFVVTATDPAGPWSEPHF 106 G++AP + + +G+F++I T+V G N++VT G WS+P Sbjct: 73 CGVWAPCLTHADGRFWLIFTDVKRYGRTTVGGASGASLRDFHNYLVTCETIDGDWSDPIH 132 Query: 107 IQGAVGIDPTIFFDDDGRAYYLGT----RPNSTGVRYDGNWEVWIQELDLETMELAGESY 162 + + G DP++F DDDGR + + RP R+ G + +Q + L GE Sbjct: 133 LNSS-GFDPSLFHDDDGRKWLVNQLWDHRPGRN--RFAG---IVLQAFSVAEQRLVGERK 186 Query: 163 VLWRGAMVDVIWPEGPHLYKKDGIYYLMIAEGGTGLNHAVTVARSQKLTEGYAGNPNNPI 222 V++ G + + E PHLYK+DG YYL+ AEGGTG HA T+ARS+ + Y +P+ + Sbjct: 187 VIFEGTAIGLT--EAPHLYKRDGWYYLLTAEGGTGWGHAATLARSRAIDGPYELHPDTYL 244 Query: 223 ITHRHLGKHYPIINVGHADLVQAEDGQWFMVMLASRPYGG-GYSNLGRETFLASVTW-ED 280 +T R H P+ GH DL + DG+ ++ L RP G G LGRET + +TW D Sbjct: 245 LTARDR-PHAPLQRAGHGDLFETADGETYIAYLCGRPLPGRGRCVLGRETAIQKLTWGAD 303 Query: 281 GWPVVNEGRG--ILEEQGVMGLT--PVPVEPQLRCDHFDSDKLALKWMFLRNPQAD-LYS 335 GWP +G G LE G GL P P P +R D FD L + + +LR P + ++S Sbjct: 304 GWPRTLDGSGDPTLETPGA-GLVDQPWPTTP-VRED-FDGTTLPIDFQWLRTPYPETIFS 360 Query: 336 LTERKGYLRLKLKPQTFKDQDNLSFVCLRQQHFDYTAAAVMEFEARSIHEAAGLAVIQN- 394 LT R G+LRL + ++ + V RQQ Y+AA ++FE +AAGL N Sbjct: 361 LTARPGFLRLYGR-ESLGSVFTQALVARRQQAHCYSAATRLDFEPAHFQQAAGLVCYYNG 419 Query: 395 DKFHIRFERVLHDGR--QALRVVTCVNG---GETNVAQTDVEAQRLYLKMAARGQELSFY 449 K H + V HD + LRV+TC ++ A + A + L++ + L F Sbjct: 420 SKLH--YLHVTHDDEAGKHLRVMTCTPDSPQADSFTAPIPLGAGPVDLRVEVDFERLRFG 477 Query: 450 YSTDGDQYHLVAEHVDTSSLSTEA----AGGFVGCCIGMYCTG-NGTATDNVADFDWFEY 504 + G + + E D S LS EA A F G +GM C +G AT ADFDWF+Y Sbjct: 478 FRQAGGDWRWLPEVFDASILSDEATAPGAPNFTGAFVGMACQDMSGMAT--AADFDWFDY 535 >CAC3452 [G] COG3507 Beta-xylosidase Length = 533 Score = 262 bits (670), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 173/537 (32%), Positives = 279/537 (51%), Gaps = 46/537 (8%) Query: 1 MPGFYPDPSVCRVGGDYYLVTSTFAYFPGVPIFHSRDLVNWKQIGNVLDRPSQLNLQGAG 60 + GF PDPS+CR DYY+ TSTF +FPGV I HS+DLVNW + + L+R S L+++G Sbjct: 7 LRGFNPDPSICRADTDYYIATSTFEWFPGVQIHHSKDLVNWHLVAHPLNRTSLLDMKGNP 66 Query: 61 HSQGIFAPTIRYHEGKFYMITTN--VTHG-----GNFVVTATDPAGPWSEPHFIQGAVGI 113 +S GI+AP + YH+GKF++I T+ VT G N++ T G WS+P + G+ G Sbjct: 67 NSGGIWAPDLSYHDGKFWLIYTDVKVTDGMWKDCHNYLTTCESVDGVWSDPITLNGS-GF 125 Query: 114 DPTIFFDDDGRAYYLGTRPNSTGVRYDGNWEVWIQELDLETMELAGESYVLWRGAMVDVI 173 D ++F D+DG+ Y + + ++ + + +QE + +L G++ ++++G D+ Sbjct: 126 DASLFHDNDGKKYLVNMYWDQRTYNHNF-YGIVLQEYSDKEKKLIGKAKIIYKGT--DIK 182 Query: 174 WPEGPHLYKKDGIYYLMIAEGGTGLNHAVTVARSQKLTEGYAGNPNNPIITHRHLGKHYP 233 + EGPH+Y YYL AEGGT H+ TVARS+ + Y +P P++T H ++ Sbjct: 183 YTEGPHIYHIGDYYYLFTAEGGTTYEHSETVARSKNIDGPYEIDPEYPLLTSWHDPRN-S 241 Query: 234 IINVGHADLVQAEDGQWFMVMLASRPY---------GGGYSNLGRETFLASVTWEDGWPV 284 + GHA LV +W++ L RP GY LGRET + + W D WP Sbjct: 242 LQKCGHASLVHTHTDEWYLAHLVGRPLPVGNQPVLEQRGYCPLGRETSIQRIEWVDNWPR 301 Query: 285 VNEGRGILEEQGVMGLTPVPVEPQLRC-------DHFDSDKLALKWMFLRNP-QADLYSL 336 V G+ QG + + P P+++ D+FDSDKL + + LR P ++ SL Sbjct: 302 VVGGK-----QGSVNVE-APKIPEVKWEKTYDEKDNFDSDKLNINFQSLRIPLTENIASL 355 Query: 337 TERKGYLRLKLKPQTFKDQDNLSFVCLRQQHFDYTAAAVMEFEARSIHEAAGLAVIQNDK 396 +KG LRL K ++ +F+ R Q F + A+ + F + +AAGL N + Sbjct: 356 KAKKGNLRLYGK-ESLTSTFTQAFIARRWQSFKFDASTSVSFSPDTFQQAAGLTCYYNTE 414 Query: 397 FHIRFERVLHDGR-QALRVVTCVNGG-----ETNVAQTDVEAQRLYLKMAARGQELSFYY 450 + ++ + + + +V C N ++NV + + ++LK+ R + + Y Sbjct: 415 NWSTIQVTWNEDKGRVIDIVCCDNFHFDMPLKSNVIPIPKDVEYIHLKVEVRVETYQYSY 474 Query: 451 STDGDQYHLVAEHVDTSSLS---TEAAGGFVGCCIGMYCTGNGTATDNVADFDWFEY 504 S DG + V ++ LS + G F G +G+ C + T + ADFD+F Y Sbjct: 475 SFDGINWSKVPAIFESRKLSDDYVQGGGFFTGAFVGINCI-DITGNNKPADFDYFCY 530 >BS_xynB [G] COG3507 Beta-xylosidase Length = 533 Score = 249 bits (637), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 173/531 (32%), Positives = 258/531 (48%), Gaps = 35/531 (6%) Query: 1 MPGFYPDPSVCRVGGDYYLVTSTFAYFPGVPIFHSRDLVNWKQIGNVLDRPSQLNLQGAG 60 + GF PDPS+CR G DYY+ STF +FPGV I HS+DLVNW + + L R SQL+++G Sbjct: 8 LKGFNPDPSICRAGEDYYIAVSTFEWFPGVQIHHSKDLVNWHLVAHPLQRVSQLDMKGNP 67 Query: 61 HSQGIFAPTIRYHEGKFYMITTNV-------THGGNFVVTATDPAGPWSEPHFIQGAVGI 113 +S G++AP + Y +GKF++I T+V N++VT G WSEP + + G Sbjct: 68 NSGGVWAPCLSYSDGKFWLIYTDVKVVDGAWKDCHNYLVTCETINGDWSEPIKLNSS-GF 126 Query: 114 DPTIFFDDDGRAYYLGTRPNSTGVRYDGNWEVWIQELDLETMELAGESYVLWRGAMVDVI 173 D ++F D DG+ Y L + R+ V IQE + +L G+ V++ G D Sbjct: 127 DASLFHDTDGKKYLLNMLWDHRIDRHSFGGIV-IQEYSDKEQKLIGKPKVIFEG--TDRK 183 Query: 174 WPEGPHLYKKDGIYYLMIAEGGTGLNHAVTVARSQKLTEGYAGNPNNPIITHRHLGKHYP 233 E PHLY YYL+ AEGGT HA T+ARS + Y +P+NPI+T H + P Sbjct: 184 LTEAPHLYHIGNYYYLLTAEGGTRYEHAATIARSANIEGPYEVHPDNPILTSWHDPGN-P 242 Query: 234 IINVGHADLVQAEDGQWFMVMLASRPY---------GGGYSNLGRETFLASVTWEDGWPV 284 + GHA +VQ +W++ L RP GY LGRET + + W+D WP Sbjct: 243 LQKCGHASIVQTHTDEWYLAHLTGRPIHPDDDSIFQQRGYCPLGRETAIQKLYWKDEWPY 302 Query: 285 VNEGR-GILEEQGVMGLTPVPVEPQLRCDHFDSDKLALKWMFLRNP-QADLYSLTERKGY 342 V G+ G LE + D F+ L + + LR P +L SLT+ + Sbjct: 303 VVGGKEGSLEVDAPSIPETIFEATYPEVDEFEDSTLNINFQTLRIPFTNELGSLTQAPNH 362 Query: 343 LRLKLKPQTFKDQDNLSFVCLRQQHFDYTAAAVMEFEARSIHEAAGLAVIQNDKFHIRFE 402 LRL ++ +FV R Q + A +EF + +AAGL N + + Sbjct: 363 LRL-FGHESLTSTFTQAFVARRWQSLHFEAETAVEFYPENFQQAAGLVNYYNTENWTALQ 421 Query: 403 RVLHDGR--QALRVVTCVNGGETNVAQTDV----EAQRLYLKMAARGQELSFYYSTDGDQ 456 V HD + L + C N + + E + +YL++ + ++YS + + Sbjct: 422 -VTHDEELGRILELTICDNFSFSQPLNNKIVIPREVKYVYLRVNIEKDKYYYFYSFNKED 480 Query: 457 YHLVAEHVDTSSLSTE---AAGGFVGCCIGMYCTGNGTATDNVADFDWFEY 504 +H + +++ LS + G F G +GM C G ADF +F Y Sbjct: 481 WHKIDIALESKKLSDDYIRGGGFFTGAFVGMQCQDTG-GNHIPADFRYFRY 530 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 41,996,732 Number of extensions: 1803569 Number of successful extensions: 2567 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 2518 Number of HSP's successfully gapped: 8 Length of query: 507 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 396 Effective length of database: 25,576,357 Effective search space: 10128237372 Effective search space used: 10128237372 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 118 (50.1 bits)