BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0015.p (361 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3679 [T] COG4753 Response regulator containing CheY-like recei... 97 5e-20 BH2109 [T] COG4753 Response regulator containing CheY-like recei... 95 2e-19 BH3842 [T] COG4753 Response regulator containing CheY-like recei... 91 4e-18 BH1123 [T] COG4753 Response regulator containing CheY-like recei... 79 8e-15 SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing prot... 76 6e-14 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 49/143 (34%), Positives = 85/143 (59%), Gaps = 15/143 (10%) Query: 232 DQLMEWLEEFLK-----DKILMLRSIWKQNV---RKE-------VAEAKRYVMNHIGEKV 276 ++L+E +E L+ D+ + +W + + KE + EA Y+ H+ +K+ Sbjct: 112 EKLIEAVESALQMKKEQDRFGQVEKVWDEKIDAIEKERLSSSDSIHEALHYIDAHLDQKI 171 Query: 277 GMDEMARRLGLNPTHFSRLFKVETGLTFIEYVTKLKMERAQDLLNQTNSTIVEIAEQLAY 336 G+ ++A+ + LNP++ S LFK +T +TF EY+T+ +++ A+ LL T+ I +IAE+ Y Sbjct: 172 GLKDVAKSVHLNPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLLVSTDRPISDIAEKCGY 231 Query: 337 DNVSYFIKLFRNFSGMTPVEYRK 359 YFIK+F+ GMTP +YRK Sbjct: 232 QTAKYFIKIFKEHEGMTPTQYRK 254 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 116/225 (51%), Gaps = 4/225 (1%) Query: 138 EPVKTTNEDLFIHYSEILQQLRDCIQNEDSSRVSAAVADIKNDIGAMKYPVESVKSWLLK 197 E V TT ++L H + L + ++ +S R+ + I ++ K+ +VK+ + + Sbjct: 302 ESVDTTYDELNNH---LFVTLMEQMEENNSDRIVNIIDKIFSEFQTKKFVPSAVKTSVNR 358 Query: 198 MVMELELKYIVMQNFVNNFNSERHQRSIREFE-TLDQLMEWLEEFLKDKILMLRSIWKQN 256 V ++ M+ S + + + T DQL + +F+ + ++++ + K+N Sbjct: 359 CVHKVMQTVQAMEGDTGKIISAQAMTNWESYNLTFDQLKQVFTKFVLEAAVIIQELRKEN 418 Query: 257 VRKEVAEAKRYVMNHIGEKVGMDEMARRLGLNPTHFSRLFKVETGLTFIEYVTKLKMERA 316 ++ ++ + K Y+ NH E + + +A +NP + +LFK G+ F EY+ KL+M A Sbjct: 419 MKSDIYKVKTYIENHYHENISLKSIASLFYMNPVYMGQLFKKTFGVYFKEYLLKLRMNEA 478 Query: 317 QDLLNQTNSTIVEIAEQLAYDNVSYFIKLFRNFSGMTPVEYRKSI 361 + LL QT+ + E+AE++ + + YF+ F + MTP EYR + Sbjct: 479 KKLLRQTDMRVYEVAERVGFGSTDYFVTQFEKINKMTPTEYRNKL 523 >BH3842 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 530 Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 40/98 (40%), Positives = 68/98 (69%) Query: 264 AKRYVMNHIGEKVGMDEMARRLGLNPTHFSRLFKVETGLTFIEYVTKLKMERAQDLLNQT 323 A+ YV +H E + +D++A+ +GL+P + S+LFK LTF EYVT+L++E A+ LL+ T Sbjct: 420 ARDYVHDHFREPLTLDDLAKHIGLSPYYVSKLFKERFDLTFSEYVTQLRVEHAKQLLSLT 479 Query: 324 NSTIVEIAEQLAYDNVSYFIKLFRNFSGMTPVEYRKSI 361 ++ EI ++ Y + +YF ++F+ +G +P +YRKSI Sbjct: 480 QKSLKEITYEIGYKDPNYFSRVFKKLTGKSPSDYRKSI 517 >BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 526 Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 106/208 (50%), Gaps = 16/208 (7%) Query: 156 QQLRDCIQNEDSSRVSAAVADIKNDIGAMKYPV-----ESVKSWLLKMVMELELKYIVMQ 210 Q+L D I+ D++R + + +G + Y ++ W + ++ ++ + Sbjct: 319 QKLYDAIRYADATRAKEVLEEAVGVLGEVPYSTLVGYKVGIEIWTIITYSLYDIGILIQE 378 Query: 211 NFVNNFNSERHQRSIREFETLDQLMEWLEEFLKDKI--LMLRSIWKQNVRKE--VAEAKR 266 F +F+ +H ++ EW+ FL ++I + W +N++ + + + Sbjct: 379 MFDEDFDLAQHLTKQGNWQ------EWIR-FLCEQIEHICYHQQWDENIKHKQLIEQVMI 431 Query: 267 YVMNHIGEKVGMDEMARRLGLNPTHFSRLFKVETGLTFIEYVTKLKMERAQDLLNQTNST 326 Y+ H+ E + + ++A L ++ + ++FK G +F YVT+L+ME+A+ ++ + N Sbjct: 432 YIEKHLAENITLQDIADELYISRNYLGQIFKKVVGESFKNYVTRLRMEKAKKMIQEGNFL 491 Query: 327 IVEIAEQLAYDNVSYFIKLFRNFSGMTP 354 I E++E++ Y N +YF +F+ ++G TP Sbjct: 492 IYEVSEKVGYVNPAYFTTMFKKYTGYTP 519 >SMa0319 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 333 Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 64/104 (61%), Gaps = 4/104 (3%) Query: 257 VRKEVAEAKRYVMNHIGEKVGMDEMARRLGLNPTHFSRLFKVETGLTFIEYVTKLKMERA 316 +R+ VA ++ H+ E + ++A +G++ HFSRLFK TGL+ Y + ++ RA Sbjct: 234 LRRAVA----HLEEHLAEPFNLAQLAETVGMSEFHFSRLFKKATGLSPSRYFIRQRVARA 289 Query: 317 QDLLNQTNSTIVEIAEQLAYDNVSYFIKLFRNFSGMTPVEYRKS 360 Q LL +T+++I+EI + Y + S+F ++FR +G+ P YR+ Sbjct: 290 QLLLQETDTSIIEIGMSVGYSSPSHFAQVFRRETGLPPSHYRRG 333 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.138 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,609,826 Number of extensions: 871750 Number of successful extensions: 4281 Number of sequences better than 1.0e-05: 822 Number of HSP's gapped: 4278 Number of HSP's successfully gapped: 822 Length of query: 361 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 253 Effective length of database: 25,922,359 Effective search space: 6558356827 Effective search space used: 6558356827 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 116 (49.3 bits)