BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0014.p (166 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPy1587 [T] COG4753 Response regulator containing CheY-like rece... 93 1e-19 BH2109 [T] COG4753 Response regulator containing CheY-like recei... 91 9e-19 BH1123 [T] COG4753 Response regulator containing CheY-like recei... 85 5e-17 SP0661 [T] COG4753 Response regulator containing CheY-like recei... 83 2e-16 BH1910 [T] COG4753 Response regulator containing CheY-like recei... 79 3e-15 >SPy1587 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 494 Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 44/105 (41%), Positives = 67/105 (63%) Query: 2 VYKVVLADDHFPVLEYLCASIPWDTLGLELSASCSDGKQAWEACLLHQPDILLTDIGMPA 61 +YKV+L DD + +L+ L I W LG E+ + GK+A + D++++D+ MP Sbjct: 1 MYKVLLVDDEYMILQGLTMIIDWQALGFEVVQTARSGKEALAYLTQYPVDVMISDVTMPG 60 Query: 62 MDGLELIQKAREVNPQLQTIILSCHGEFEYAQKAVKLNVAEYILK 106 M GL+LI+ A+ +PQLQT+ILS + EF Y QKA++L Y+LK Sbjct: 61 MTGLDLIEAAKTYHPQLQTLILSGYQEFSYVQKAMELETKGYLLK 105 >BH2109 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 525 Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 44/106 (41%), Positives = 69/106 (65%), Gaps = 1/106 (0%) Query: 2 VYKVVLADDHFPVLEYLCASIPWDTLGLELSASCSDGKQAWEACLLHQPDILLTDIGMPA 61 +YKV+LADD F V L + I W+ G E++A +G+ A++ +PD+++TDI MP Sbjct: 1 MYKVLLADDEFFVRHGLKSLIEWEKCGYEVAAEADNGEDAFKLVQEIKPDLVITDIRMPV 60 Query: 62 MDGLELIQKARE-VNPQLQTIILSCHGEFEYAQKAVKLNVAEYILK 106 DGL+LIQK E ++ + II+S + +F YAQKAV+ +++LK Sbjct: 61 FDGLQLIQKVNETLSFNTKFIIISGYNDFSYAQKAVRFGAVDFVLK 106 >BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 526 Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/136 (36%), Positives = 79/136 (58%), Gaps = 2/136 (1%) Query: 2 VYKVVLADDHFPVLEYLCASIPWDTLGLELSASCSDGKQAWEACLLHQPDILLTDIGMPA 61 ++KVV+ DD V+ L I W LG E ++G++ + P I+LTDI MP Sbjct: 1 MWKVVIIDDEEHVVRGLKKIISWKALGCECVGEAANGRRGLDIVRETSPHIVLTDIYMPI 60 Query: 62 MDGLELIQKAREVNPQLQTIILSCHGEFEYAQKAVKLNVAEYILKENLQIDQVISVLTEA 121 M GL++IQ RE + +ILS + EFE+A+KA++LN+ +Y+ K +D + +VL Sbjct: 61 MYGLDMIQILREDGFDGEVVILSGYSEFEHARKAMQLNITDYLSKP-ASVDTIETVLKRV 119 Query: 122 VSRLEVKMISKNNYLQ 137 +++LE K + YLQ Sbjct: 120 INKLEEKQ-RQQGYLQ 134 >SP0661 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 245 Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 79/143 (55%), Gaps = 5/143 (3%) Query: 1 MVYKVVLADDHFPVLEYLCASIPWDTLGLELSASCSDGKQAWEACLLHQPDILLTDIGMP 60 M Y +++ +D + V + L + +E+ +G+QAWE PDI+LTDI MP Sbjct: 1 MTYTILIVEDEYLVRQGLTKLVNVAAYDMEIIGQAENGRQAWELIQKQVPDIILTDINMP 60 Query: 61 AMDGLELIQKAREVNPQLQTIILSCHGEFEYAQKAVKLNVAEYILKENLQIDQVISVLTE 120 ++G++L RE PQ+ + L+ + +F+YA AVKL V +Y+LK + D + E Sbjct: 61 HLNGIQLASLVRETYPQVHLVFLTGYDDFDYALSAVKLGVDDYLLKPFSRQD-----IEE 115 Query: 121 AVSRLEVKMISKNNYLQMQKLVS 143 + +++ K+ + Q+Q L++ Sbjct: 116 MLGKIKQKLDKEEKEEQLQDLLT 138 >BH1910 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 506 Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 1/124 (0%) Query: 2 VYKVVLADDHFPVLEYLCASIPWDTLGLELSASCSDGKQAWEACLLHQPDILLTDIGMPA 61 +Y V++ DD V E L A I W+ G + + +GK+ + PD+++ DI MP Sbjct: 1 MYDVMIVDDEAMVREGLKALISWEEYGFRVIDTARNGKEGFTKYRQLSPDLMIVDIRMPE 60 Query: 62 MDGLELIQKAREVNPQLQTIILSCHGEFEYAQKAVKLNVAEYILKENLQIDQVISVLTEA 121 +DGL LI+ R + + IILS H +F YA+KA+ +Y+LK L D++I L + Sbjct: 61 VDGLSLIESIRAEDSAIHFIILSGHSDFNYAKKALGCQCDDYLLKP-LDEDELIDSLKKV 119 Query: 122 VSRL 125 R+ Sbjct: 120 YGRI 123 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 10,621,130 Number of extensions: 409996 Number of successful extensions: 1303 Number of sequences better than 1.0e-05: 94 Number of HSP's gapped: 1347 Number of HSP's successfully gapped: 94 Length of query: 166 Length of database: 38,378,431 Length adjustment: 98 Effective length of query: 68 Effective length of database: 27,075,699 Effective search space: 1841147532 Effective search space used: 1841147532 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 112 (47.8 bits)