BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0012.p (314 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 187 2e-47 BH1865 [G] COG1175 ABC-type sugar transport systems, permease co... 152 9e-37 BMEII0113 [G] COG1175 ABC-type sugar transport systems, permease... 150 4e-36 mll1715 [G] COG1175 ABC-type sugar transport systems, permease c... 145 9e-35 SP1682 [G] COG1175 ABC-type sugar transport systems, permease co... 145 1e-34 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 104/259 (40%), Positives = 147/259 (56%), Gaps = 5/259 (1%) Query: 57 ISFSDWNFVSGIEGFHFVGVDNYTRLMQDESFHRSLINNL-IMIXXXXXXXXXXXXXXXX 115 ISF+DW+ VS I HF G +NY RL D F +S N + +I Sbjct: 38 ISFTDWDLVSTI---HFTGFENYKRLFNDPEFWKSFRNTITFIIGYLPSVMILGLACALM 94 Query: 116 INKATYFKTFFKVIYFMPFISSFVAIALLWRVLYHPNNGPINGFLRSIGVENPPLWLADP 175 +N+ + FF+ +YF+P I+S+VA++L+W+ L++P+ G IN FL IG+ P WL DP Sbjct: 95 LNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAGPN-WLTDP 153 Query: 176 KFALISVMIIMVWTSLGFNMVIYLAGLQNISRDLYEAADVDGATPLRQFFRIXXXXXXXX 235 + A+I+V+I W +GF MV++L GLQNIS YEAA++DGA+ LRQ F I Sbjct: 154 QTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFSITIPLLTPT 213 Query: 236 XXXXXITGIVGSFKVFDLIMVLTNGGPAGSTSVIVFYLYEVAFINLESGYASAMGXXXXX 295 I ++ SF+VFD +M++T GGP+G+T +V +Y AF E GYASAM Sbjct: 214 TFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHAFRYFEMGYASAMSWILFI 273 Query: 296 XXXXXXXXQWVGQKKWVNY 314 Q QK+W NY Sbjct: 274 VIFIITIIQNKLQKRWSNY 292 >BH1865 [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 99/315 (31%), Positives = 153/315 (48%), Gaps = 9/315 (2%) Query: 1 MEVIPTEGTVKRFGKPGTGRMRKQSFYDNIAGYLFISPMXXXXXXXXXXXXXXSGVISFS 60 MEV T + R+ K+ F+ GYLFI+P S +SF+ Sbjct: 3 MEVETPRETKTTKARKQKRRLNKEYFW----GYLFIAPPIIGFAIFALGPMLYSIYVSFT 58 Query: 61 DWNFVSGIEGFHFVGVDNYTRL-MQDESFHRSLINNLIMIXXXXXXXXXXXXXXXXINKA 119 D++ + + G DNY RL + D+ F +++ N +N+ Sbjct: 59 DFDLYNEPV---WTGADNYYRLFVTDDLFRKTVFNTFYAALGIPIGMAVSLGIAVALNQK 115 Query: 120 TYFKTFFKVIYFMPFISSFVAIALLWRVLYHPNNGPINGFLRSIGVENPPLWLADPKFAL 179 F+ +F+P +SS VAI LLWR +++ + G +N L +G+ P WL+D K+A+ Sbjct: 116 VKGIALFRTAFFLPAVSSVVAITLLWRWIFNADFGLLNIMLNYVGIHGPG-WLSDEKWAM 174 Query: 180 ISVMIIMVWTSLGFNMVIYLAGLQNISRDLYEAADVDGATPLRQFFRIXXXXXXXXXXXX 239 +++I VW LG NM++YLA LQ ++ LYEAAD+DG ++F I Sbjct: 175 PAMIIQGVWGGLGINMILYLAALQGVNPALYEAADIDGGNAWQKFIHITVPSISPTTFFI 234 Query: 240 XITGIVGSFKVFDLIMVLTNGGPAGSTSVIVFYLYEVAFINLESGYASAMGXXXXXXXXX 299 IT +G+ + F M++T GGP ST+ +V+YL+ AF +E GYASAM Sbjct: 235 LITSTIGALQDFQRFMIMTEGGPNYSTTTVVYYLFLNAFRYMEMGYASAMAWVLGIIILI 294 Query: 300 XXXXQWVGQKKWVNY 314 + KKWV+Y Sbjct: 295 ITIINFKLAKKWVHY 309 >BMEII0113 [G] COG1175 ABC-type sugar transport systems, permease components Length = 270 Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/238 (36%), Positives = 127/238 (53%), Gaps = 3/238 (1%) Query: 54 SGVISFSDWNFVSGIEGFHFVGVDNYTRLMQDESFHRSLINNLIMIXXXX-XXXXXXXXX 112 + VI +S NF G +GF F+G++NY L D +F SL N + Sbjct: 9 AAVIFWSLTNFELGYDGFEFIGLENYAELFSDRTFLISLKNTAVYTAIVAPASVFLGLGV 68 Query: 113 XXXINKATYFKTFFKVIYFMPFISSFVAIALLWRVLYHPNNGPINGFLRSIGVENPPLWL 172 I K+FF+ +YF+P S VA+A +W+ L HP GP+N L IG+ P WL Sbjct: 69 ALLIEGEVRGKSFFRTVYFLPVASLLVAMATVWQYLLHPTLGPVNAMLGMIGIAGPN-WL 127 Query: 173 ADPKFALISVMIIMVWTSLGFNMVIYLAGLQNISRDLYEAADVDGATPLRQFFRIXXXXX 232 + L S+ +I +W S+GFNMV++LAGL I R+LY AA+VDG + FR+ Sbjct: 128 GSSETVLFSLALIGIWQSVGFNMVLFLAGLTAIPRELYSAAEVDGVKNSWERFRLVTWPL 187 Query: 233 XXXXXXXXIT-GIVGSFKVFDLIMVLTNGGPAGSTSVIVFYLYEVAFINLESGYASAM 289 T I+ + KVF+ + LT GGP ++ V+++ +Y+ F+ L GYASAM Sbjct: 188 LGATTLFVTTISIINAVKVFETVKTLTEGGPNKASEVLLWTIYQEGFVYLRVGYASAM 245 >mll1715 [G] COG1175 ABC-type sugar transport systems, permease components Length = 307 Score = 145 bits (366), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 124/235 (52%), Gaps = 5/235 (2%) Query: 57 ISFSDWNFVSGIEGFHFVGVDNYTRLMQDESFHRSLINNLIMIXXXX-XXXXXXXXXXXX 115 + F+D+ G F FVG +NY L+ D +F RSL N + Sbjct: 50 LGFTDFEL--GYGKFRFVGFENYAHLLNDRTFRRSLWNTSVYTAIVAPVSIVLGLGVALL 107 Query: 116 INKATYFKTFFKVIYFMPFISSFVAIALLWRVLYHPNNGPINGFLRSIGVENPPLWLADP 175 I + FF+ +YF+P S VA+A +W+ ++HP GP+N L G+ P WL Sbjct: 108 IEGEGRARGFFRTVYFLPVASLIVAMATVWQYIFHPTIGPLNALLSLAGIPGPN-WLGAS 166 Query: 176 KFALISVMIIMVWTSLGFNMVIYLAGLQNISRDLYEAADVDGA-TPLRQFFRIXXXXXXX 234 L S+ II +W S+GFNMV++LAGL I R+LY AA VDGA + L +FF + Sbjct: 167 NTVLYSLSIIGIWQSVGFNMVLFLAGLTAIPRELYAAAHVDGAKSALDRFFLVTWPMLGP 226 Query: 235 XXXXXXITGIVGSFKVFDLIMVLTNGGPAGSTSVIVFYLYEVAFINLESGYASAM 289 I + KVF+ + +LT+GGP ++ V++F +Y+ F+ L GYASAM Sbjct: 227 TTLFVVTISITNAVKVFETVKMLTDGGPNKASEVLLFTIYQEGFVYLRVGYASAM 281 >SP1682 [G] COG1175 ABC-type sugar transport systems, permease components Length = 298 Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/276 (30%), Positives = 150/276 (54%), Gaps = 7/276 (2%) Query: 18 TGRMRKQSFYDNIAGYLFISPMXXXXXXXXXXXXXXSGVISFSDWNFVSGIEGFHFVGVD 77 T ++ K + + Y F++P+ + SF +++ + F FVG+D Sbjct: 3 TVKVNKIRMRETVISYAFLAPVLFFFVIFVLAPMVMGFITSFFNYS----MTKFEFVGLD 58 Query: 78 NYTRLMQDESFHRSLINNLIMI--XXXXXXXXXXXXXXXXINKATYFKTFFKVIYFMPFI 135 NY R+ +D F +SLIN +I++ ++ ++F++ ++F+P + Sbjct: 59 NYIRMFKDPVFTKSLINTVILVIGSVPVVVLFSLFVASQTYHQNVIARSFYRFVFFLPVV 118 Query: 136 SSFVAIALLWRVLYHPNNGPINGFLRSIGVENPPL-WLADPKFALISVMIIMVWTSLGFN 194 + VA+ ++W+ +Y P +G +N L+S + + + WL D +AL+++MII++ TS+G Sbjct: 119 TGSVAVTVVWKWIYDPLSGILNFVLKSSHIISQNISWLGDKNWALMAIMIILLTTSVGQP 178 Query: 195 MVIYLAGLQNISRDLYEAADVDGATPLRQFFRIXXXXXXXXXXXXXITGIVGSFKVFDLI 254 +++Y+A + NI L EAA VDGAT + F++I I + SF+ F LI Sbjct: 179 IILYIAAMGNIDNSLVEAARVDGATEFQVFWKIKWPSLLPTTLYIAIITTINSFQCFALI 238 Query: 255 MVLTNGGPAGSTSVIVFYLYEVAFINLESGYASAMG 290 +LT+GGP STS +++YLYE AF E GYA+ +G Sbjct: 239 QLLTSGGPNYSTSTLMYYLYEKAFQLTEYGYANTIG 274 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.143 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,278,890 Number of extensions: 633145 Number of successful extensions: 2253 Number of sequences better than 1.0e-05: 148 Number of HSP's gapped: 2016 Number of HSP's successfully gapped: 148 Length of query: 314 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 208 Effective length of database: 26,153,027 Effective search space: 5439829616 Effective search space used: 5439829616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)