BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0009.p (447 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic ... 82 2e-15 BH1244 [G] COG1653 ABC-type sugar transport system, periplasmic ... 64 4e-10 PH1039 [G] COG1653 ABC-type sugar transport system, periplasmic ... 57 5e-08 SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic ... 54 5e-07 CAC0429 [G] COG1653 ABC-type sugar transport system, periplasmic... 54 6e-07 >PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 464 Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 90/341 (26%), Positives = 152/341 (44%), Gaps = 35/341 (10%) Query: 43 VTIKLSNWYA--KKMDNWDVVIEEFEKQHPNIKVEFASAEDNNSNEFYKKXXXXXXXXXX 100 V I+ + W A +M N+ +IE FEK++PNIKV++ + + + Sbjct: 68 VFIRFAGWSAGETEMKNYQRMIELFEKENPNIKVKYEVI-----TQMFHENILASFGAGV 122 Query: 101 XXXIMFSNMTYLSQRAELGMIEPLDDFLAKDGIN-FADEYNADTKIDGKVYGLPGKSSQG 159 + + + ++ E G + P+ + + IN F K +GK+YGLP S Sbjct: 123 APDVFYVDSSWAPIFIEKGALYPISELADESFINKFYPFLLEPFKKNGKLYGLPKDWSML 182 Query: 160 LVFINENHLKEAGLELPKDWTWDQYMEYAKAMTTTDGGKTRYGTYFHSWIQYGYLVQNFG 219 +F N+ ++AGL P + TWD+ +EYAK +T GK Y + +Y + + G Sbjct: 183 ALFYNKKLFEQAGLTKPPE-TWDELLEYAKIITEKT-GKPGLAIYLGGFNRYVPVAVSNG 240 Query: 220 QSVNANLTTDDGKTANIDNPYIRKSL----ELRLQG--ETEGSATPYSEVVSQKLN---Y 270 +D + DNP +R++L L +G E E P V + + Sbjct: 241 APKPWFEKPED--ASWFDNPVVRETLTWYINLYRKGKVEREKKGLPPYVVAPEDVGAGWL 298 Query: 271 RPQYFNQDTSMIVTGSFLIPEAGGTDTIPASFKTV----FAPLPKLNAGDPMSSNVSGDV 326 + Q +M+++G+++IP D P +FK APLP G + V + Sbjct: 299 GDAFGQQKVAMVISGNWMIPFL--ADQFP-NFKYGEDWDIAPLPAGKNGR--VTMVYTVI 353 Query: 327 LTVYSKSKHKDEAYTFIRWF-----STEGIVLQGKNIPSWK 362 L + SK+KH EA+ F+ + E +V G+ +PS K Sbjct: 354 LGINSKTKHPKEAWKFVEFILGPRGQKELVVKAGQTLPSMK 394 >BH1244 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 440 Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 94/449 (20%), Positives = 192/449 (42%), Gaps = 42/449 (9%) Query: 14 LLALLVSGCGTPDSEEKAASTT--GEKT-------NEVVTIKLSNWYAKKMDNWDVVIEE 64 +++++++ CG D ++ A T G++T +EVVTI + Y + N + +IE Sbjct: 16 VMSVMLAACGGSDPTDEPAEPTEPGDETEEEATADDEVVTITYARGYDQTGGN-EKLIEA 74 Query: 65 FEKQHPNIKVEFASAEDNNSNEFYKKXXXXXXXXXXXXXIMFSNMTYLSQRAELGMIEPL 124 F ++HPNIKVEF + + + + ++ + ++ A+ L Sbjct: 75 FMEKHPNIKVEFQEMPADTGAQ-HSAYVTAFSAQSSEIDVFDVDVIWPAEFAQANYALEL 133 Query: 125 DDFLAKDGINFADEYNADTK---IDGKVYGLPGKSSQGLVFINENHLKEAGLELPKDWTW 181 D F+ +DGI+ + + + G Y +P + GL++ + +E P TW Sbjct: 134 DRFIERDGIDMNQYFPGTVQAGNVGGIQYAMPKFTDAGLLYYRSDI-----VETPPS-TW 187 Query: 182 DQYMEYAKAMTTTDGGKTRYGTYFHSWIQYGYLVQNFGQSVNA--NLTTDDGKTANIDNP 239 D+ +E A+ + +G T++G Y QY +V N + + A D+ I++P Sbjct: 188 DELLEMAEDLQGEEG--TKFG-YLMQAAQYEGMVVNATEFIAAYGGAVIDENGEVVINSP 244 Query: 240 YIRKSLELRLQGETEGSATPYSEVVSQKLNYRPQYFNQDTSMIVTGSFLIPEAGGTDTIP 299 K LE +++ + P S++ + F Q ++ + D Sbjct: 245 EAIKGLE-KMKEIVQSDVVP-SDITNFMETETANSFIQGNAVFARNWPYMQALSDGDESN 302 Query: 300 ASFKTVFAPLPKLNAGDPMSSNVSGDVLTVYSKSKHKDEAYTFIRWFS-TEG---IVLQG 355 S F+ LP +AG+ ++ + G ++ + S++ D A+ +++ + EG + G Sbjct: 303 VSGNVEFSLLPAGDAGN--AAGLGGWMVMINRYSENVDAAWELVKFMTGPEGQKITAIHG 360 Query: 356 KNIPSWKKANLNDVIDRIIAGSKNPEMIDKESLLYVLENXXXXXXXXXXXYHAELEKVFL 415 N P+ +A +D D ++ S + E + L+N + E+ + Sbjct: 361 GNAPTI-EALYSD--DEVLEASP---LFANEEFVETLQN---AVPRPVSPIYPEISDIMQ 411 Query: 416 EEFDKMMLSNHDIEATIQNSQAKIQKIID 444 E K++ E +QN + K+ + I+ Sbjct: 412 VEISKLLAGELTAEEAVQNMEEKMNEAIN 440 >PH1039 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 420 Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 81/383 (21%), Positives = 159/383 (41%), Gaps = 43/383 (11%) Query: 1 MFKAKRNLFIIVPLLALLVSGCGTPDSEEKAASTTGEKTNEVVTIK-LSNWYAKKMDNWD 59 M K L + ++A + SGC + + + T KT EV+T+K + W ++D + Sbjct: 5 MNKIPALLLVGALIIATVASGCIGGTTTTETPTVTKTKTQEVITLKVIGPWSGAELDAFM 64 Query: 60 VVIEEFEKQHPNIKVEFAS--AEDNNSNEFYKKXXXXXXXXXXXXXIMFSNMTYLSQRAE 117 V++ FEKQHPNIK+E+ + AED ++ ++F ++++ + Sbjct: 65 EVLKAFEKQHPNIKIEYKTYRAEDLSTI-----LPLQFESHDTPADVIFMWGWFIAEMGK 119 Query: 118 LGMIEPLDDFLAKDGINFADEYNADTKIDGKVYGLPGKSSQGLVF-INENHLKEAGLELP 176 G + L++ + + + +DGK+YG P ++ F ++ ++ L+ P Sbjct: 120 KGHLMELNNIINPE--EYVPGILDSVTVDGKIYGAPFTAAAKPGFWYRKSFFEKHNLKPP 177 Query: 177 KDWTWDQYMEYAKAMTTTDGGKTRYGT-----YFHSWIQYGYLVQNFGQSVNANLTTDDG 231 K TWD ++ + + G K + + S + +++ G+ + L + Sbjct: 178 K--TWDDFVALLEEIKKIPGIKAPIVSGDSVGWPLSDVTEHFILTFGGKDLQLKLIKGEV 235 Query: 232 KTANIDNPYIRKSLELRLQGETEGS--ATPYSEVVSQKLNYRPQYFNQDTSMIVTGSFLI 289 K ++P +RK E +L + + P + L ++ +Y +TG Sbjct: 236 KW---EDPQVRKIFEEKLVPLLKAGYFSDPIEWTSAVDLWWKGEYALYFMGTWITGMVDD 292 Query: 290 PEAGGTDTIPASFKTVFAPLPKLNAGDPMSSNVSGDVLTVYSKSKHKDEAYTFIRWFSTE 349 P G +P V AP D L V + H EA ++ +TE Sbjct: 293 PNDLGLIPLPGVKAMVIAP----------------DYLMVPKYTSHPKEALELAKFLATE 336 Query: 350 G----IVLQGKNIPSWKKANLND 368 G + + + +WKK +++D Sbjct: 337 GQRIHVGTKSGKLATWKKVSIDD 359 >SP1897 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 419 Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 69/332 (20%), Positives = 138/332 (41%), Gaps = 37/332 (11%) Query: 31 AASTTGEKTNEVVTIKLSNWYAKKMDNWDVVIEEFEKQHPNIKVEFASAEDNNSNEFYKK 90 A S G+ + VTI+ N + + + +FEK++P IKV+ + N+ E K Sbjct: 22 ACSNYGKSADGTVTIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNVP--NAGEVLKT 79 Query: 91 XXXXXXXXXXXXXIMFSNMTYLSQRAELGMIEPLD--DFLAKDGINFADEYNADTKIDGK 148 ++ L + A+ G+ E L D+L + +A++Y ++ K Sbjct: 80 RVLAGDVPDVVN--IYPQSIELQEWAKAGVFEDLSNKDYLKRVKNGYAEKY----AVNEK 133 Query: 149 VYGLPGKSSQGLVFINENHLKEAGLELPKDWTWDQYMEYAKAMTTTDGGKTRYGTY-FHS 207 VY +P ++ ++ N++ +E GL++P+ TWD++ + K + G+T +G + Sbjct: 134 VYNVPFTANAYGIYYNKDKFEELGLKVPE--TWDEFEQLVKDIVAK--GQTPFGIAGADA 189 Query: 208 WIQYGYLVQNF------GQSVNANLTTDDGKTANIDNPYIRKSLE----LRLQGETEGS- 256 W GY F G+ N L + +P ++ ++ LR+ G + + Sbjct: 190 WTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNW 249 Query: 257 -ATPYSEVVSQKLNYRPQYFNQDTSMIVTGSFLIPEAGGTDTIPASFKTVFAPLPKLNAG 315 Y++V+ + D M GS+ I + +FK +P G Sbjct: 250 EGAGYTDVIG-------AFARGDVLMTPNGSWAIT---AINEQKPNFKIGTFMIPGKEKG 299 Query: 316 DPMSSNVSGDVLTVYSKSKHKDEAYTFIRWFS 347 ++ ++ + +KH EA F+ + + Sbjct: 300 QSLTVGAGDLAWSISATTKHPKEANAFVEYMT 331 >CAC0429 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 447 Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 32/232 (13%) Query: 7 NLFIIVPLLALLVSGCGTPDSEEKAASTTGEKTNEVVTIKLSNWYAKKMDNWDVV---IE 63 +L +I L A ++SGC ++ KA+++ E T++++ W+A N + + +E Sbjct: 7 SLLLIGALSATILSGC----AQSKASAS------ESKTVQITFWHAMSGKNGEALNKMVE 56 Query: 64 EFEKQHPNIKV--EFASAEDNNSNEFYKKXXXXXXXXXXXXXIMFSNMTYLSQRAELGMI 121 +F H +IKV EF D N+ + + S+ AE Sbjct: 57 DFNNSHSDIKVKAEFQGKYDEELNKLKSAEKGGEAPDIVQVYDIGTRFMIDSKWAE---- 112 Query: 122 EPLDDFLAKDGINFAD-EYN--ADTKIDGKVYGLPGKSSQGLVFINENHLKEAGLE---L 175 P+ +F+ KD + + E N A ++ K+Y +P SS +++ N++ KEA L+ Sbjct: 113 -PIQNFIDKDKYDTSSLEPNLLAYYTVNNKLYSMPFNSSTPILYYNKSAFKEADLDPNKP 171 Query: 176 PKDWTWDQYMEYAKAMTTTD--GGKTRYG--TYFHSWIQYGYLVQNFGQSVN 223 PK T+ + Y+KA+ D G TRYG + W+ YLV+ VN Sbjct: 172 PK--TFSELERYSKALAKKDSSGNVTRYGFSMAIYGWLFEQYLVKQGKNYVN 221 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 31,473,512 Number of extensions: 1346067 Number of successful extensions: 1804 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 1811 Number of HSP's successfully gapped: 15 Length of query: 447 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 337 Effective length of database: 25,691,691 Effective search space: 8658099867 Effective search space used: 8658099867 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 117 (49.7 bits)