BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0007.p (441 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yesO [G] COG1653 ABC-type sugar transport system, periplasmic... 173 6e-43 YPO1719 [G] COG1653 ABC-type sugar transport system, periplasmic... 125 2e-28 BH1117 [G] COG1653 ABC-type sugar transport system, periplasmic ... 122 2e-27 BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasm... 66 1e-10 all1916 [G] COG1653 ABC-type sugar transport system, periplasmic... 57 7e-08 >BS_yesO [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 412 Score = 173 bits (438), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 113/393 (28%), Positives = 203/393 (51%), Gaps = 15/393 (3%) Query: 53 VKLRIMWWGSQPRHEATLAALDLYTKNNPNVTFEPEYSGMDGYLDKLSTQAAANNAPDIV 112 V LRI WWG QPRH+ T ++LY K NP+V E E++ D Y KL+ +AA PD++ Sbjct: 18 VTLRIAWWGGQPRHDYTTKVIELYEKKNPHVHIEAEFANWDDYWKKLAPMSAAGQLPDVI 77 Query: 113 QLDPGWVPDWMSRKQLTELAP-----EVDVSKFDSKLLAGGQLDGKQYAVPLGSVAFGMV 167 Q+D ++ + + QL +L P +DVS D +L+GG++D K Y LG ++ Sbjct: 78 QMDTAYLAQYGKKNQLEDLTPYTKDGTIDVSSIDENMLSGGKIDNKLYGFTLGVNVLSVI 137 Query: 168 YDKAAMDKLGIANPANGWTWDDFFALAKESKAKLPSGQYFTLDYAGNYFMYSAYQYAKGK 227 ++ + K G++ WTW+D+ LA + + K +G Y + + Y KG+ Sbjct: 138 ANEDLLKKAGVSINQENWTWEDYEKLAYDLQEK--AGVYGSNGMHPPDIFFPYYLRTKGE 195 Query: 228 GQVITDDGH---FNVDQAAYLEWTKKFEELRKEGLVPPADVNASDKENDPQMDLLAAGKV 284 + +DG + DQ ++++ ++ L K P D +A K + D + GK Sbjct: 196 -RFYKEDGTGLAYQDDQ-LFVDYFERQLRLVKAKTSPTPDESAQIKGMED--DFIVKGKS 251 Query: 285 LFRYSFSNNLGTWDSIKPGAYALVTMP-RAEEAGGWLKPSMYLSVSKNSKHAEEAKKFIN 343 +++SN + + +L P + +E LKPSM S+ K+S+H +EA KFIN Sbjct: 252 AITWNYSNQYLGFARLTDSPLSLYLPPEQMQEKALTLKPSMLFSIPKSSEHKKEAAKFIN 311 Query: 344 WFVNDQEAGKILQTFRGLPANKEISTSLEASMSDLDKVGLELLRATEKDGQTWSAGAGGW 403 +FVN++EA ++++ RG+P + +++ +++ +++ + +E + K+ Sbjct: 312 FFVNNEEANQLIKGERGVPVSDKVADAIKPKLNEEETNIVEYVETASKNISKADPPEPVG 371 Query: 404 TNFIDKDWVLVRDQLSFGKVTPEKAFEQLKEAA 436 + + K DQ+ + KV+PEKA + ++ A Sbjct: 372 SAEVIKLLKDTSDQILYQKVSPEKAAKTFRKKA 404 >YPO1719 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 430 Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 92/337 (27%), Positives = 162/337 (48%), Gaps = 21/337 (6%) Query: 53 VKLRIMWWGSQPRHEATLAALDLYTKNNPNVTFEPEYSGMDGYLDKLSTQAAANNAPDIV 112 V LR+ WWG RH+ TL AL+ + K +PN+ + EY+G DG+L +L+TQ A PD++ Sbjct: 28 VNLRMSWWGGNGRHQVTLKALEEFHKQHPNINVKAEYTGWDGHLSRLTTQIAGGTEPDVM 87 Query: 113 QLDPGWVP----DWMSRKQLTELAPEVDVSKFDSKLLAGGQLDGKQYAVPLGSVAFGMVY 168 Q + W+P D L + ++D+++FD L ++GK +P+ A + Sbjct: 88 QTNWNWLPIFSKDGTGFFDLNNVKEQLDLAQFDPIELQQTTVNGKLNGIPISVTARIFYF 147 Query: 169 DKAAMDKLGIANPANGWTWDDFFALAKESKAKLPSGQYF--TLDYAGNYFMYSAYQYAKG 226 + A K G+ P TWD+ + K KL QY+ L++ + +Y K Sbjct: 148 NDATWAKAGLEYPK---TWDELLNAGQVFKEKL-GDQYYPVVLEHQDTLALIRSYMTQKY 203 Query: 227 KGQVITD-DGHFNVDQAAYLEWTKKFEELRKEGLVPPADVNAS-DKENDPQMDLLAAGKV 284 + + + F ++E+ ++++ ++P + AS K N +M G+ Sbjct: 204 NIPTVDEANKKFAYTPEQWVEFFTMYKKMVDSHVMPSSKYYASFGKSNMYEMKPWINGEW 263 Query: 285 LFRY-------SFSNNLGTWDSIKPGAYALVTMPRAEEAGGWLKPSMYLSVSKNSKHAEE 337 Y +S+NL + G Y + +P A++AG + KP+ LS+ K++KH +E Sbjct: 264 AGTYMWNSTITKYSDNLTKPAKLDLGPYPM--LPDAKDAGLFFKPAQMLSIGKSTKHPKE 321 Query: 338 AKKFINWFVNDQEAGKILQTFRGLPANKEISTSLEAS 374 + IN+ +N +E L RG+P + L A+ Sbjct: 322 SAMLINFLLNSKEGVDALGLERGVPLSAAAVAQLRAN 358 >BH1117 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 434 Score = 122 bits (305), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/335 (25%), Positives = 164/335 (48%), Gaps = 17/335 (5%) Query: 53 VKLRIMWWGSQPRHEATLAALDLYTKNNPNVTFEPEYSGMDGYLDKLSTQAAANNAPDIV 112 V LR+ WWG Q RH+ T+ A++L+ + P++ +PE++ D Y ++L+TQAA NN PD++ Sbjct: 42 VVLRVAWWGGQERHDMTIEAIELFEEKYPHIQVDPEFTSWDNYWERLTTQAAGNNLPDVI 101 Query: 113 QLDPGWVPDWMSRKQLTELAP-----EVDVSKFDSKLLAGGQLDGKQYAVPLGSVAFGMV 167 Q+D + ++ SR + +L +++ D DG +AV GS A + Sbjct: 102 QMDNSKLNEYSSRGLVIDLQSLIADGTINLDDVDDVYQDMNVQDGSVWAVSAGSNALAAI 161 Query: 168 YDKAAMDKLGIANPANGWTWDDFFALAKESKAKLPSGQYFTLDYA-GNYFMYSAYQYAKG 226 Y++ +++ GI G+T++DF+ + K + G ++ D+ Y M+ Y G Sbjct: 162 YNEEMLEEQGI-QLEPGYTYEDFYEAMQTLKENI-DGDFYGYDFGNAEYEMFFVYARQNG 219 Query: 227 KGQVITDDGHFNVDQAAYLEWTKKFEELRKEGLVPPADVNASDKENDPQM--DLLAAGKV 284 + D + +++ +++ +G+ PP + + + D +A + Sbjct: 220 ESFYNEDGTGLGFENQTLIDFLTFVKQMVDDGVAPPHALTLEYIQGGESLLGDQMAGAAM 279 Query: 285 LFRYSFSNNLGTWDSIKPGAYALVTMPRAEEA--GGWLKPSMYLSVSKNSKHAEEAKKFI 342 + SN + L+ +P + G W++PSM S+S +S+ E A FI Sbjct: 280 ----AASNGIIGLQQSTEHQLGLMLLPSLDGGVHGNWIRPSMSYSISSHSEEQEAAALFI 335 Query: 343 NWFVNDQEAGKILQTFRGLPANKEISTSLEASMSD 377 ++ ND +A +IL+ RG+P + ++ L A M D Sbjct: 336 DFLTNDLQANEILKAERGVPISSKVREHL-APMVD 369 >BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 398 Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 77/304 (25%), Positives = 129/304 (42%), Gaps = 25/304 (8%) Query: 76 YTKNNPNVTFEPEYSGMDGYLDKLSTQAAANNAPDIVQLDPGWVPDWMSRKQLTELAPEV 135 + NP +T E D L KL+T +A D+ + W+ D++ + L + Sbjct: 37 FEAENPGITLNFEVVPWDVLLQKLTTDISAGTNADLSIIGTRWLIDFVQQGIAEPLDGYM 96 Query: 136 D---VSKFDSKLLAGGQLDGKQYAVPLGSVAFGMVYDKAAMDKLGIANPANGWTWDDFFA 192 + +F L+ LDGK Y +P+ + M Y+K +K GI NP WD+ A Sbjct: 97 NDEFKGRFIETFLSPSVLDGKTYGLPIAASVRAMYYNKDLFEKAGIKNPPA--NWDELKA 154 Query: 193 LAKESKAKLPSGQYFTLDYAGN------YFMYSAYQYAKGKGQVITDDGHFNVDQAAYLE 246 A +K K G+ + G Y+ Y+ + Y +++ DG + LE Sbjct: 155 DA--AKIKALGGENYGFGLQGKEIETDVYYYYAMWSYGT---EILNKDGTSGLSTPGALE 209 Query: 247 WTKKFEELRKEGLVPPADVNASDKENDPQMDLLAAGKV--LFRYSFSNNLGTWDS--IKP 302 K ++ + +GL P V + +E+ +L GKV + F +N ++ +K Sbjct: 210 AAKLYKSMIDDGLTQPG-VTSYARED--VQNLFKQGKVGMMITAPFLSNQIKEEAPNLKY 266 Query: 303 GAYALVTMPRAEEAGGWLKPSMYLSVSKNSKHAEEAKKFINWFVNDQEAGKILQTFRGLP 362 G A+ P A G + + + +NSK+ EEA K +++ K Q LP Sbjct: 267 GVAAIPAGPTG--ARGTYGVTDSVIMFQNSKNKEEAWKVLDFLFQKDWRAKFTQNEGFLP 324 Query: 363 ANKE 366 NKE Sbjct: 325 VNKE 328 >all1916 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 71/327 (21%), Positives = 124/327 (37%), Gaps = 26/327 (7%) Query: 53 VKLRIMWWGSQPRHEATL-AALDLYTKNNPNVTFEPEYSGMDGYLDKLSTQAAANNAPDI 111 V +++ WG P + L L + +P++ + E D Y+D + T+ APD+ Sbjct: 37 VTVKLSGWGGSPVEQKLLKQVLQDFEAQHPHIKVKYEVIS-DQYMDVIKTRLIGEAAPDV 95 Query: 112 VQLDPGWVPDWMSRKQLTEL----APEVDVSKFDSKLLAGGQLDGKQYAVPLGSVAFGMV 167 LD P MS+ L L PE D+S F++ LL + Y P + Sbjct: 96 FYLDALEAPFLMSQNVLEPLDNYITPEFDLSDFEANLLDNFKYQNHIYGFPKDYSTLALF 155 Query: 168 YDKAAMDKLGIANPANGWTWDDFFALAKESKAKLPSGQYFTLDYAGNYFMYSAYQYAKGK 227 Y+K A G+++P TW + +++ KL + A Y+ Sbjct: 156 YNKKAFAAAGLSSPPA--TWTELRTYSQQLTGKLNK---YGFGEAPE-LARQVYKIKAFG 209 Query: 228 GQVITDDGHFNVDQAAYLEWTKKFEELRKEGLVPPADVNASDKENDPQMDLLAAGKVLFR 287 G+VI +G+ A L + F+ + + + SD + ++ KV Sbjct: 210 GEVINQNGYATFASEAGL---RGFQLVIDQYQKDKSSAQKSDVGTNSGSEMFGQEKVAMV 266 Query: 288 YSFSNNLGTW------DSIKPGAYALVTMPRAEEAGGWLKPSMYLSVSKNSKHAEEAKKF 341 G W ++ +A +P G + ++ +SK S+H EA + Sbjct: 267 IE-----GNWAIPYLQETFPQLEFATAQLPTINNKKGTMVFTVAYVMSKQSQHKAEAWEL 321 Query: 342 INWFVNDQEAGKILQTFRGLPANKEIS 368 I++ K T LP K +S Sbjct: 322 ISYLTGKAGMQKWTSTGFALPTRKSVS 348 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.131 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 32,050,807 Number of extensions: 1408498 Number of successful extensions: 1976 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 1975 Number of HSP's successfully gapped: 21 Length of query: 441 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 332 Effective length of database: 25,807,025 Effective search space: 8567932300 Effective search space used: 8567932300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 117 (49.7 bits)