BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0284.0006.p
         (705 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0055_2 [I] COG0511 Biotin carboxyl carrier protein                 645   0.0  
STM0055_1 [C] COG5016 Pyruvate/oxaloacetate carboxyltransferase       645   0.0  

>STM0055_2 [I] COG0511 Biotin carboxyl carrier protein
          Length = 116

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 0/590 (0%), Positives = 0/590 (0%), Gaps = 5/590 (0%)

Query: 119 EGYAIQTDSLTGN--IAIGAVTSAGILYGVFHLLRIMGTGGSVQHLNIVENPVNQLRMIN 176
           E  A Q  ++ G                                                
Sbjct: 86  EIRAAQAGTVRGIAV                                              145

Query: 177 QWDNMDGSVERGYAGESIFYEANRITGNLQRIQDYARLLASCGXXXXXXXXXXXHRVESR 236
                                                                       
Sbjct: 146 -                                                            204

Query: 237 LLTE-FLPDVAKLAAIFRAYAIKLFLSVNYASTMEIGGLLSADPLDSDVREWWKAAASEL 295
                                                                       
Sbjct: 205                                                              264

Query: 296 YAVIPDFGGFLVKADSENRPGPFTYGRDHADGANMLAEALKPHGGIVIWRCFVYNCKQDW 355
                                                                       
Sbjct: 265                                                              324

Query: 356 XXXXXXXXXXXYDHFQPLDGRFMDNVILQVKNGPIDFQVREPVSPLLGAMPQTNQVIEFQ 415
                                                                       
Sbjct: 325                                                              384

Query: 416 IAQEYTGQQRHVCYLVPQWKEILNFDTHLQGEGATVKRIVDGSVHGNAYSGFAAVSNIGN 475
                                                                       
Sbjct: 385                                                              444

Query: 476 DTNWTGHLLAQANLFGYGRLAWNPEMSAEKIALEWIMLTFGTHELLVQTILDILMNSWEI 535
                                                                       
Sbjct: 445                                                              504

Query: 536 YESYTAPLGVGFMVNPDHHYGPNVDGYEYSMWGTYHFADCYGIGVDRTTATGTGYTSQYA 595
                                                                       
Sbjct: 505 -                                                            563

Query: 596 RINMELYESLESCPDELLLFFHHVPYTHVLHSGKTVIQHIYDTHFAGAERASQLAAAWEL 655
                                                                       
Sbjct: 564                                                              623

Query: 656 VKDQVGEQAYRQVADRLAEQAGHAKEWRDRINTYFFRKSGIADQWGRTIY 705
                                                             
Sbjct: 624                                                    673


>STM0055_1 [C] COG5016 Pyruvate/oxaloacetate carboxyltransferase
          Length = 475

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 0/590 (0%), Positives = 0/590 (0%), Gaps = 5/590 (0%)

Query: 119 EGYAIQTDSLTGN--IAIGAVTSAGILYGVFHLLRIMGTGGSVQHLNIVENPVNQLRMIN 176
                          +         +      +        ++Q +              
Sbjct: 86  LLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNMKAALQAVRSHGAHAQGTLSYT 145

Query: 177 QWDNMDGSVERGYAGESIFYEANRITGNLQRIQDYARLLASCGXXXXXXXXXXXHRVESR 236
                          + +    + I            + A                +   
Sbjct: 146 TSPAHTLQTWLDLTEQLLETGVDSIAIK-DMSGILTPMAAYELVSEIKKRFEVRLHLHCH 204

Query: 237 LLTE-FLPDVAKLAAIFRAYAIKLFLSVNYASTMEIGGLLSADPLDSDVREWWKAAASEL 295
             T      + K              S++          L A    ++          E 
Sbjct: 205 ATTGMAEMALLKAIEAGVDGVDTAISSMSATYGHPATEALVATLAGTEHDTGLDILKLEN 264

Query: 296 YAVIPDFGGFLVKADSENRPGPFTYGRDHADGANMLAEALKPHGGIVIWRCFVYNCKQDW 355
            A           A      G  +          ML                     +  
Sbjct: 265 IAAYFREVRKKYHAFEGQLKGYDSRILVAQVPGGMLTNLESQLKQQNAADKLDQVLAEIP 324

Query: 356 XXXXXXXXXXXYDHFQPLDGRFMDNVILQVKNGPIDFQVREPVSPLLGAMPQTNQVIEFQ 415
                            + G      +L  +      +    +                Q
Sbjct: 325 RVREDLGFIPLVTPTSQIVGTQAVLNVLTGERYKTIAKETAGILKGEYGHTPVPVNAALQ 384

Query: 416 IAQEYTGQQRHVCYLVPQWKEILNFDTHLQGEGATVKRIVDGSVHGNAYSGFAAVSNIGN 475
                 G             E+   +  ++ +       + G+   +  +          
Sbjct: 385 ARVLEGGAPVTCRPADLLKPELAELEADVRRQAQEKGITLAGNAIDDVLTVALFPQIGLK 444

Query: 476 DTNWTGHLLAQANLFGYGRLAWNPEMSAEKIALEWIMLTFGTHELLVQTILDILMNSWEI 535
                                                                       
Sbjct: 445                                                              504

Query: 536 YESYTAPLGVGFMVNPDHHYGPNVDGYEYSMWGTYHFADCYGIGVDRTTATGTGYTSQYA 595
                                                                       
Sbjct: 505 -                                                            563

Query: 596 RINMELYESLESCPDELLLFFHHVPYTHVLHSGKTVIQHIYDTHFAGAERASQLAAAWEL 655
                                                                       
Sbjct: 564                                                              623

Query: 656 VKDQVGEQAYRQVADRLAEQAGHAKEWRDRINTYFFRKSGIADQWGRTIY 705
                                                             
Sbjct: 624                                                    673


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 52,284,863
Number of extensions: 2231586
Number of successful extensions: 3931
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3925
Number of HSP's successfully gapped: 2
Length of query: 705
Length of database: 38,378,431
Length adjustment: 113
Effective length of query: 592
Effective length of database: 25,345,689
Effective search space: 15004647888
Effective search space used: 15004647888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 119 (50.4 bits)