BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0005.p (324 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1118 [G] COG1175 ABC-type sugar transport systems, permease co... 329 3e-90 BS_yesP [G] COG1175 ABC-type sugar transport systems, permease c... 319 3e-87 YPO1722 [G] COG1175 ABC-type sugar transport systems, permease c... 283 3e-76 BH1865 [G] COG1175 ABC-type sugar transport systems, permease co... 190 3e-48 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 180 2e-45 >BH1118 [G] COG1175 ABC-type sugar transport systems, permease components Length = 318 Score = 329 bits (844), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 161/309 (52%), Positives = 211/309 (68%), Gaps = 3/309 (0%) Query: 11 AIAQSAAKTKKSSYFRSRWNAPLAGYLFISPWLIGFLALTAYPLFLSLYYSFTDYTLLQP 70 AI +KT++ R +W GY ISPWL+GF L P+ SLY+SFTDY +L Sbjct: 11 AIELYDSKTRQE---RKKWKESFVGYAMISPWLLGFFGLVIGPMIASLYFSFTDYDMLSS 67 Query: 71 MKWIGTRNYERIFTADPKFIQSAKVTFMYVLASVPLKLIAALFVAIILSRAVKGISFYRT 130 W+G +NY IFT+DP+F+QS KVT ++V PLKL ALF+A++ + KG + T Sbjct: 68 ANWVGLQNYIHIFTSDPRFVQSLKVTLIFVFVPTPLKLAFALFLAMLFNTGRKGSGLFST 127 Query: 131 AIYFPSLIGGSIGVSLLWRNIFGVDGIFNKLIGVFGFEGKGWITSPDTALSTLILLTVWQ 190 Y PS+IGGS+ V+++W+ +FG G N + +FGF G WI S D ALS LILL VWQ Sbjct: 128 IYYIPSIIGGSVAVAVVWKQLFGSRGAVNSFLELFGFSGVNWIGSTDYALSILILLVVWQ 187 Query: 191 FGSTMVIFLAGLKQIPNDLYEASSVDGANKITQFFRITLPMLSPILYFNLIMAVIGAFQM 250 FGS M+IFLAGL+QIP +LYEA+SVDGAN +FF ITLPML+P+++FNLIM IG F Sbjct: 188 FGSPMIIFLAGLRQIPQELYEAASVDGANSFRKFFSITLPMLTPVIFFNLIMQTIGGFMT 247 Query: 251 FTSAFVITNGGPMNSTYVYAMYLYERAFSRYELGYASALAWIMLVAIIAATVLISYTSKY 310 FT A++IT GGP++ST YA+YLYE AF +GYASA+AWI+LV I T + +S Y Sbjct: 248 FTQAYLITGGGPLDSTLFYAVYLYEVAFEYLRMGYASAMAWILLVIIGGITFVFFKSSSY 307 Query: 311 WVFYETDTG 319 WV YE++ G Sbjct: 308 WVHYESEGG 316 >BS_yesP [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 319 bits (818), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 163/307 (53%), Positives = 221/307 (71%), Gaps = 6/307 (1%) Query: 13 AQSAAKTKKSSYFRSRWNAPLAGYLFISPWLIGFLALTAYPLFLSLYYSFTDYTLLQPMK 72 A KKS RS LAGY FISP++IGFL T P+ SL+ SFT Y L K Sbjct: 3 GNGADAMKKS---RSIRKDNLAGYAFISPFIIGFLCFTVIPMGASLFLSFTSYDLFTAPK 59 Query: 73 WIGTRNYERIFTADPKFIQSAKVTFMYVLASVPLKLIAALFVAIILSRAVKGISFYRTAI 132 WIG N++ +FT D K+ QS KVTF YVLA VPL+L ALF+A+IL+ A KG + YRT Sbjct: 60 WIGLDNFKEMFTGDEKYWQSLKVTFTYVLAGVPLRLGFALFIAVILNNAAKGTAIYRTLF 119 Query: 133 YFPSLIGGSIGVSLLWRNIFGVDGIFNKLIGVFGFEGK-GWITSPDTALSTLILLTVWQF 191 Y PS+IGGS+ V+++WRNIFG DG+ N L+ G + K W +P +AL TLILL+VWQF Sbjct: 120 YLPSIIGGSVAVAIMWRNIFGNDGVINALLFFVGIDQKILWYQNPTSALWTLILLSVWQF 179 Query: 192 GSTMVIFLAGLKQIPNDLYEASSVDGANKITQFFRITLPMLSPILYFNLIMAVIGAFQMF 251 GS+M+IFLAGLK IP+ EA+SVDGAN++ +FF+ITLP+L+PI++FNL+M I AF F Sbjct: 180 GSSMLIFLAGLKNIPSSYLEAASVDGANRVQRFFKITLPILTPIIFFNLVMQTISAFMTF 239 Query: 252 TSAFVIT--NGGPMNSTYVYAMYLYERAFSRYELGYASALAWIMLVAIIAATVLISYTSK 309 T A++I+ GGP++ T +Y++YL++RAF+ +++GYASA+AW+MLV + T+++ TS Sbjct: 240 TPAYIISKGEGGPLDGTLLYSLYLFQRAFNYFQMGYASAMAWVMLVIVGLITLILFKTSS 299 Query: 310 YWVFYET 316 YWV YE+ Sbjct: 300 YWVHYES 306 >YPO1722 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 283 bits (723), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 130/290 (44%), Positives = 196/290 (67%) Query: 33 LAGYLFISPWLIGFLALTAYPLFLSLYYSFTDYTLLQPMKWIGTRNYERIFTADPKFIQS 92 + G +ISP++IG + TA+P S + SFT+Y L+ P + G NY + T D F +S Sbjct: 6 MLGLAYISPYIIGLIIFTAFPFVSSFFLSFTEYDLMSPPVYNGIENYRYMLTEDDLFWKS 65 Query: 93 AKVTFMYVLASVPLKLIAALFVAIILSRAVKGISFYRTAIYFPSLIGGSIGVSLLWRNIF 152 VTF YV ++PLKL AL +A +L+ ++GI F+RTA Y PS++G S+ +++LWR +F Sbjct: 66 MGVTFAYVFLTIPLKLAFALGIAFVLNFKLRGIGFFRTAFYIPSILGSSVAIAVLWRALF 125 Query: 153 GVDGIFNKLIGVFGFEGKGWITSPDTALSTLILLTVWQFGSTMVIFLAGLKQIPNDLYEA 212 +DG+ N IGVFGFE W+ P AL+++ LL VWQFGS MVIFLA L+ +P YEA Sbjct: 126 AIDGLLNSFIGVFGFEAINWLGEPSLALTSVTLLRVWQFGSAMVIFLAALQNVPQSQYEA 185 Query: 213 SSVDGANKITQFFRITLPMLSPILYFNLIMAVIGAFQMFTSAFVITNGGPMNSTYVYAMY 272 + +DGA+K F ++T+P+++P+++FN IM AFQ FT+ +VIT GGP + TY++++Y Sbjct: 186 AMIDGASKWQMFMKVTVPLITPVIFFNFIMQTTQAFQEFTAPYVITGGGPTHYTYLFSLY 245 Query: 273 LYERAFSRYELGYASALAWIMLVAIIAATVLISYTSKYWVFYETDTGGKK 322 +Y+ AF +++GY +ALAW++ + + + +SKYWVFY D GGK Sbjct: 246 IYDTAFKYFDMGYGAALAWVLFLVVALFASIAFKSSKYWVFYSADKGGKN 295 >BH1865 [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 112/300 (37%), Positives = 170/300 (56%), Gaps = 5/300 (1%) Query: 18 KTKKSSYFRSRWNAP-LAGYLFISPWLIGFLALTAYPLFLSLYYSFTDYTLLQPMKWIGT 76 KT K+ + R N GYLFI+P +IGF P+ S+Y SFTD+ L W G Sbjct: 12 KTTKARKQKRRLNKEYFWGYLFIAPPIIGFAIFALGPMLYSIYVSFTDFDLYNEPVWTGA 71 Query: 77 RNYERIFTADPKFIQSAKVTFMYVLASVPLKLIAALFVAIILSRAVKGISFYRTAIYFPS 136 NY R+F D F ++ TF Y +P+ + +L +A+ L++ VKGI+ +RTA + P+ Sbjct: 72 DNYYRLFVTDDLFRKTVFNTF-YAALGIPIGMAVSLGIAVALNQKVKGIALFRTAFFLPA 130 Query: 137 LIGGSIGVSLLWRNIFGVD-GIFNKLIGVFGFEGKGWITSPDTALSTLILLTVWQ-FGST 194 + + ++LLWR IF D G+ N ++ G G GW++ A+ +I+ VW G Sbjct: 131 -VSSVVAITLLWRWIFNADFGLLNIMLNYVGIHGPGWLSDEKWAMPAMIIQGVWGGLGIN 189 Query: 195 MVIFLAGLKQIPNDLYEASSVDGANKITQFFRITLPMLSPILYFNLIMAVIGAFQMFTSA 254 M+++LA L+ + LYEA+ +DG N +F IT+P +SP +F LI + IGA Q F Sbjct: 190 MILYLAALQGVNPALYEAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDFQRF 249 Query: 255 FVITNGGPMNSTYVYAMYLYERAFSRYELGYASALAWIMLVAIIAATVLISYTSKYWVFY 314 ++T GGP ST YL+ AF E+GYASA+AW++ + I+ T++ +K WV Y Sbjct: 250 MIMTEGGPNYSTTTVVYYLFLNAFRYMEMGYASAMAWVLGIIILIITIINFKLAKKWVHY 309 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 159/257 (61%), Gaps = 4/257 (1%) Query: 37 LFISPWLIGFLALTAYPLFLSLYYSFTDYTLLQPMKWIGTRNYERIFTADPKFIQSAKVT 96 +F+ P L+GFL A P+ SL SFTD+ L+ + + G NY+R+F DP+F +S + T Sbjct: 15 IFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFN-DPEFWKSFRNT 73 Query: 97 FMYVLASVPLKLIAALFVAIILSRAVKGISFYRTAIYFPSLIGGSIGVSLLWRNIFGVD- 155 +++ +P +I L A++L++ +K F+R A+YF +I + VSL+W+ +F Sbjct: 74 ITFIIGYLPSVMILGLACALMLNQKIKLRPFFR-AVYFLPVITSWVAVSLVWKWLFNPSY 132 Query: 156 GIFNKLIGVFGFEGKGWITSPDTALSTLILLTVWQ-FGSTMVIFLAGLKQIPNDLYEASS 214 G+ N + + G G W+T P TA+ +I+ + W+ G MV+FL GL+ I YEA++ Sbjct: 133 GLINYFLSLIGIAGPNWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAAN 192 Query: 215 VDGANKITQFFRITLPMLSPILYFNLIMAVIGAFQMFTSAFVITNGGPMNSTYVYAMYLY 274 +DGA+K+ Q F IT+P+L+P +F I+++I +FQ+F ++T GGP +T +Y Sbjct: 193 MDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNIY 252 Query: 275 ERAFSRYELGYASALAW 291 AF +E+GYASA++W Sbjct: 253 NHAFRYFEMGYASAMSW 269 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.140 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,239,942 Number of extensions: 865326 Number of successful extensions: 3233 Number of sequences better than 1.0e-05: 169 Number of HSP's gapped: 3000 Number of HSP's successfully gapped: 170 Length of query: 324 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 217 Effective length of database: 26,037,693 Effective search space: 5650179381 Effective search space used: 5650179381 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)