BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0004.p (281 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 287 1e-77 YPO1721 [G] COG0395 ABC-type sugar transport system, permease co... 260 1e-69 BS_yesQ [G] COG0395 ABC-type sugar transport system, permease co... 243 3e-64 all4824 [G] COG0395 ABC-type sugar transport system, permease co... 164 2e-40 ML1425 [G] COG0395 ABC-type sugar transport system, permease com... 162 4e-40 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 142/269 (52%), Positives = 188/269 (69%), Gaps = 5/269 (1%) Query: 14 FMILFSLIMVYPVLWWVGASLKHSTELGS--PSIFPTAPQWSNFTKGWTSVPGHTFTDFY 71 F+I F IMVYP+LW V +SLK ++E+ S S+ P+ WSN+ GW F ++ Sbjct: 16 FVIAFGFIMVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYF 75 Query: 72 LNTFGLEFAVIVATLLSCTLVAFGFARLDFPLKNFWFSILMLTLMMPGQVLIIPQYALFH 131 N+F + +V++ +LS ++VA+GFARL F K F+ L+ T+M+P Q+ +IPQY LFH Sbjct: 76 KNSFIITTSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFH 135 Query: 132 QLGWVNTYLPFIVPHLLATGAGGSFFVFLLIQFIRGVPRELDESAKIDGCSWFGIFWRVV 191 LGWVNT+ P IVP L G FF+FLLIQFIRG+PRELDE+A IDGCS FG+FWRV+ Sbjct: 136 NLGWVNTFYPLIVPAFLG---GTPFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVI 192 Query: 192 MPLAFPAIVTVTIFCFLWNWDDFLGHLLYINSVDKYTVGLALRMINDSQSAAEWGQLLAM 251 +PL PA+VTV IF F+W WDDFL L+Y+N D TV L LR D++S WG LLAM Sbjct: 193 LPLLKPALVTVAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLAM 252 Query: 252 SLVSILPATIVFMFLQKYFVEGIATTGIK 280 S +S+LP I+F+F Q+Y VEGI+TTG+K Sbjct: 253 STLSLLPQFIIFLFFQRYLVEGISTTGLK 281 >YPO1721 [G] COG0395 ABC-type sugar transport system, permease component Length = 306 Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 123/278 (44%), Positives = 190/278 (68%), Gaps = 4/278 (1%) Query: 5 KWKPAFRHLFMILFSLIMVYPVLWWVGASLKHSTEL-GSPSIFPTAPQWSNFTKGWTSVP 63 K AFR++ +I+ L+M+YP+LW A+ K + E+ + ++P P F GW + Sbjct: 32 KVSAAFRYIVLIIVGLLMLYPLLWMFSAAFKPNNEIFTTLGLWPEHPTSDGFINGWKTGT 91 Query: 64 GHTFTDFYLNTFGLEFAVIVATLLSCTLVAFGFARLDFPLKNFWFSILMLTLMMPGQVLI 123 + F + LNTF ++ T++S T+VA+GFAR + P K FWF+ L+ T+++P VL+ Sbjct: 92 EYNFGHYMLNTFKYVIPKVILTIISSTIVAYGFARFEIPWKKFWFTTLITTMLLPSTVLL 151 Query: 124 IPQYALFHQLGWVNTYLPFIVPHLLATGAGGSFFVFLLIQFIRGVPRELDESAKIDGCSW 183 IPQY +F ++G +N+YLP +P AT FFVF+LIQF+RGVPR+++E+A+IDGC+ Sbjct: 152 IPQYIMFREMGMLNSYLPLYLPLAFATQG---FFVFMLIQFLRGVPRDMEEAAQIDGCNS 208 Query: 184 FGIFWRVVMPLAFPAIVTVTIFCFLWNWDDFLGHLLYINSVDKYTVGLALRMINDSQSAA 243 F + W VV+P+ PAI++V +F F+W+ +DF+G L+Y+ SVDKY + LAL+M D A Sbjct: 209 FQVLWYVVVPILKPAIISVALFQFMWSMNDFIGPLIYVYSVDKYPIALALKMSIDVTEGA 268 Query: 244 EWGQLLAMSLVSILPATIVFMFLQKYFVEGIATTGIKG 281 W ++LAM+ +SILP+ IVF Q+YFV+G+ ++GIKG Sbjct: 269 PWNEILAMASISILPSIIVFFLAQRYFVQGVTSSGIKG 306 >BS_yesQ [G] COG0395 ABC-type sugar transport system, permease component Length = 296 Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 116/271 (42%), Positives = 175/271 (64%), Gaps = 6/271 (2%) Query: 12 HLFMILFSLIMVYPVLWWVGASLKHSTEL--GSPSIFPTAPQWSNFTKGWTSVPGHTFTD 69 H+F +++++YPV+W +S K S + S S+ P SN+ +GW + G F Sbjct: 30 HVFTATLAVLLLYPVIWLFVSSFKESASIFTTSHSLIPDPFILSNYAEGWKGIAGQPFLT 89 Query: 70 FYLNTFGLEFAVIVATLLSCTLVAFGFARLDFPLKNFWFSILMLTLMMPGQVLIIPQYAL 129 F N+ + + ++S ++A+GFAR+ F K FWF+ +M TLM+P +VL+IPQY + Sbjct: 90 FIKNSAIIVGLSTIGAVMSSAVIAYGFARIPFKGKKFWFACMMGTLMLPHEVLMIPQYIM 149 Query: 130 FHQLGWVNTYLPFIVPHLLATGAGGSFFVFLLIQFIRGVPRELDESAKIDGCSWFGIFWR 189 F +L W+N++ P +VP G +FF+FL+IQFIR +P ELDE+A+IDGC F FWR Sbjct: 150 FAKLDWLNSFKPIVVPQFF----GHAFFIFLMIQFIRTIPEELDEAARIDGCGRFACFWR 205 Query: 190 VVMPLAFPAIVTVTIFCFLWNWDDFLGHLLYINSVDKYTVGLALRMINDSQSAAEWGQLL 249 +++PL PA+ T IF F W W++ + LLY+N + Y V LAL++ D++SA+ WG + Sbjct: 206 IILPLIAPALATSAIFSFYWKWEELIQPLLYLNKPELYPVSLALKLFLDTESASNWGAMF 265 Query: 250 AMSLVSILPATIVFMFLQKYFVEGIATTGIK 280 AMS VS+LP +VF QKY V+GI+TTG+K Sbjct: 266 AMSAVSLLPVILVFFLFQKYIVQGISTTGLK 296 >all4824 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 164 bits (414), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 158/279 (56%), Gaps = 12/279 (4%) Query: 6 WKPAFRHLFMILFSLIMVYPVLWWVGASLKHSTE---LGSPSIFPTAPQWSNFTKGWTSV 62 W+ + + + + I ++P+LW + +LK TE P + P P NF K W S+ Sbjct: 10 WRTLVMYGLLGVIAFITLFPLLWLISTALKSPTENIFQSPPQLLPNQPTVDNFFKVWNSL 69 Query: 63 PGHTFTDFYLNTFGLEFAVIVATLLSCTLVAFGFARLDFPLKNFWFSILMLTLMMPGQVL 122 P F + N+ + + LL C+L A+ ARL FP +++ F ++ T+M+P Q++ Sbjct: 70 P---FGQYLYNSTLVSVLTVGLNLLFCSLAAYPLARLSFPGRDWIFIAIVSTIMIPFQIV 126 Query: 123 IIPQYALFHQLGWVNTYLPFIVPHLLATGAGGSFFVFLLIQFIRGVPRELDESAKIDGCS 182 +IP Y L QLG NTYL + P L +F +FLL Q GVP+E++E+A++DG S Sbjct: 127 MIPLYILTVQLGLRNTYLGMMFPSL-----ASAFGIFLLRQAFMGVPKEIEEAARMDGSS 181 Query: 183 WFGIFWRVVMPLAFPAIVTVTIFCFLWNWDDFLGHLLYINSVDKYTVGLALRMINDSQSA 242 G++W +++P PA+VT+ IF F+ W DFL L+ I + YT+ L + + + S Sbjct: 182 ELGLWWHIMLPAVRPALVTLAIFVFIGAWSDFLWPLIVIQDENLYTLPLGVAKLAGTFS- 240 Query: 243 AEWGQLLAMSLVSILPATIVFMFLQKYFVEGIATTGIKG 281 +W + A S+++I P ++F+ LQ+Y VE +G+KG Sbjct: 241 LDWRLVAAGSVIAIAPVLLLFLILQRYIVETDIGSGVKG 279 >ML1425 [G] COG0395 ABC-type sugar transport system, permease component Length = 283 Score = 162 bits (411), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 98/261 (37%), Positives = 150/261 (57%), Gaps = 12/261 (4%) Query: 23 VYPVLWWVGASLKHSTELGSPSIFPTAPQWSNFTKGWTSVPGHTFTDFYLNTFGLEFAVI 82 ++P++W + SLK E+ P++ P PQWSN+T+ + +P F + NT V Sbjct: 33 LFPIVWALSGSLKKEGEIREPTLLPAHPQWSNYTEVFDLIP---FWRMFFNTVLYAGYVT 89 Query: 83 VATLLSCTLVAFGFARLDFPLKNFWFSILMLTLMMPGQVLIIPQYALFHQLGWVNTYLPF 142 V + C+L + FARL F ++ F + + TLMMP V IIPQ+ L LGW +T Sbjct: 90 VGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLTVTIIPQFILMRVLGWTDTPWAM 149 Query: 143 IVPHLLATGAGGSFFVFLLIQFIRGVPRELDESAKIDGCSWFGIFWRVVMPLAFPAIVTV 202 IVP L G +F +L+ QF R +P +L+E+A +DGCS + I+WRV++P A PA+ + Sbjct: 150 IVPGLF----GSAFGTYLMRQFFRTLPSDLEEAAILDGCSPWQIYWRVLLPHAKPAVGVL 205 Query: 203 TIFCFLWNWDDFLGHLLYI--NSVDKYTVGLALRMINDSQSAAEWGQLLAMSLVSILPAT 260 + ++ W+DFL LL I NS+ T+GL +RM + + W ++A S++ ILP Sbjct: 206 AVLTWVNVWNDFLWPLLMIQRNSLATLTLGL-VRMRGEYGTC--WPVIMATSMLIILPLV 262 Query: 261 IVFMFLQKYFVEGIATTGIKG 281 I++ Q+ FV GI T I G Sbjct: 263 IIYTIAQRAFVRGITVTRIGG 283 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.144 0.482 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,435,999 Number of extensions: 832694 Number of successful extensions: 2614 Number of sequences better than 1.0e-05: 160 Number of HSP's gapped: 2359 Number of HSP's successfully gapped: 160 Length of query: 281 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 176 Effective length of database: 26,268,361 Effective search space: 4623231536 Effective search space used: 4623231536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)