BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0282.0010.p (218 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3429 [TK] COG2197 Response regulator containing a CheY-like r... 91 1e-18 SPy1621 [TK] COG2197 Response regulator containing a CheY-like r... 86 5e-17 SP0387 [TK] COG2197 Response regulator containing a CheY-like re... 82 4e-16 BS_ydfI [TK] COG2197 Response regulator containing a CheY-like r... 78 9e-15 DR0432 [TK] COG2197 Response regulator containing a CheY-like re... 77 2e-14 >CAC3429 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 217 Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 59/206 (28%), Positives = 105/206 (50%), Gaps = 2/206 (0%) Query: 2 MKVWRVIIVGCHPTSMLGTKLILEESKEIEVVGMFSNWSEGVHTVQQQQPDLVLTDYQMP 61 M R+++V H G KLI E E EVVG N + + + + +PD++L D MP Sbjct: 1 MSKRRILVVDDHFVVREGLKLIFELEDEYEVVGEAENGEQALLLIDELKPDVILMDLSMP 60 Query: 62 EGNVEGALVEMKQSSKSTHFIIMTEEEDKELFQPLIELGASGVLSKGASPRQLLQMISGL 121 + + L +K+ S II+T + L + + LGA G L K + +L++ + Sbjct: 61 KMSGLDVLKALKEKENSIPIIILTTYNEDNLIKEGLSLGAKGYLLKDTTREELIRTVESA 120 Query: 122 REGFLSIPLEWAQDGFRPVASSRGLDGVLQ--LTQTEMFIMERIVQGITYDKIALEIEVS 179 G L + E ++ F ++ +T+ E+FI++ I +G +IA ++ +S Sbjct: 121 FRGELLLQPEVSKVLFNVKKKESTINTSFNASITERELFILQSIARGCKSKEIAFDMGIS 180 Query: 180 RRSIDNYLRKIYVKLEVSTRAQAIEK 205 R++ +L IY KL+VS+R++A+ K Sbjct: 181 ERTVKAHLTNIYSKLQVSSRSEAVAK 206 >SPy1621 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 213 Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 102/203 (50%), Gaps = 5/203 (2%) Query: 2 MKVWRVIIVGCHPTSMLGTKLILEESKEIEVVGMFSNWSEGVHTVQQQQPDLVLTDYQMP 61 M +VI+V H +G K L +I+VVG SN EGV +PD+++ D MP Sbjct: 1 MSKIKVILVDDHEMVRMGLKSFLNLQADIDVVGEASNGREGVDLALALKPDVLVMDLVMP 60 Query: 62 E-GNVEGALVEMKQSSKSTHFIIMTEEEDKELFQPLIELGASGVLSKGASPRQLLQMISG 120 E G VE L E+ + K +++T D E P+I+ GA G + K +S ++L I Sbjct: 61 ELGGVEATL-EVLKKWKEAKVLVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRK 119 Query: 121 LREGFLSIPLEWAQDGFRPVASSRGLDGVLQLTQTEMFIMERIVQGITYDKIALEIEVSR 180 + +G L+I E + + A + D +LT E I+ + +G IA E+ +S Sbjct: 120 VSKGELAIETEVDK---KIKAHDQHPDLHEELTAREYDILHLLAKGYDNQTIADELFISL 176 Query: 181 RSIDNYLRKIYVKLEVSTRAQAI 203 +++ ++ I KLEV R QA+ Sbjct: 177 KTVKTHVSNILAKLEVGDRTQAV 199 >SP0387 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 210 Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 107/199 (53%), Gaps = 7/199 (3%) Query: 6 RVIIVGCHPTSMLGTKLILEESKEIEVVGMFSNWSEGVHTVQQQQPDLVLTDYQMPEGN- 64 ++++V H LG K + ++EVVG SN S+G+ + +PD+++ D MPE N Sbjct: 2 KILLVDDHEMVRLGLKSYFDLQDDVEVVGEASNGSQGIDLALELRPDVIVMDIVMPEMNG 61 Query: 65 VEGALVEMKQSSKSTHFIIMTEEEDKELFQPLIELGASGVLSKGASPRQLLQMISGLREG 124 ++ L +K+ ++ +I+T D E P+++ GA G + K +S +LL +S + G Sbjct: 62 IDATLAILKEWPEAK-ILIVTSYLDNEKIMPVLDAGAKGYMLKTSSADELLHAVSKVAAG 120 Query: 125 FLSIPLEWAQDGFRPVASSRG-LDGVLQLTQTEMFIMERIVQGITYDKIALEIEVSRRSI 183 L+I Q+ + V R ++ +LT E +++ I +G +IA ++ +S +++ Sbjct: 121 ELAIE----QEVSKKVEYHRNHMELHEELTARERDVLQLIAKGYENQRIADDLFISLKTV 176 Query: 184 DNYLRKIYVKLEVSTRAQA 202 ++ I KLEVS R QA Sbjct: 177 KTHVSNILAKLEVSDRTQA 195 >BS_ydfI [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 486 Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 9/202 (4%), Positives = 32/202 (15%), Gaps = 8/202 (3%) Query: 6 RVIIVGCHPTSMLGTKLILEESKEIEVVGMFSNWSEGVHTVQQQQPDLVLTDYQMPEGNV 65 ++ + + + + + Y++ Sbjct: 3 NNLLSAKATLPVYDLNNLAPRIVHLGFGAFHRAHQGVYADILATEHFSDWGYYEVNLIGG 62 Query: 66 EGALVEMKQSSKSTHFIIMTEEEDKELFQPLIELGASGVLSKGASPRQLLQ-MISGLREG 124 E + +++Q M+ + + A V G Sbjct: 63 EQQIADLQQQDNLYTVAEMSADVWTARVVG-VVKKALHVQIDGLETVLAAMCEPQIAIVS 121 Query: 125 FLSIP--LEWAQD-GFRPVASSRGLDGVLQLTQTEMFIMERIVQGITYDKIALEIEVSRR 181 + G + + V + + Sbjct: 122 LTITEKGYFHSPATGQLMLDHPM---VAADVQNPHQPKTATGVIVEALARRKAAGLPAFT 178 Query: 182 SIDNYLRKIYVKLEVSTRAQAI 203 + + Sbjct: 179 VMSCDNMPENGHVMRDVVTSYA 200 >DR0432 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Length = 214 Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 101/201 (50%), Gaps = 6/201 (2%) Query: 6 RVIIVGCHPTSMLGTKLILEESKEIEVVGMFSNWSEGVHTVQQQQPDLVLTDYQMPEGNV 65 RV++ H G + +LE S+ + V+G +N E V QPD++L D QMPE + Sbjct: 3 RVLLADDHALFRQGLRSLLE-SEGMRVIGEAANGREAVRYAADTQPDVILMDIQMPELDG 61 Query: 66 EGALVEMKQSSKSTHFIIMT-EEEDKELFQPLIELGASGVLSKGASPRQLLQMISGLREG 124 A + + + I++T +D+ +F+ ++ GA G + K A L+ I+ + G Sbjct: 62 VKATQSILEINPQARVIMITMYRQDRYVFEA-VKAGARGYILKDADAGTLIDAITRVAAG 120 Query: 125 FLSIPLEWAQ---DGFRPVASSRGLDGVLQLTQTEMFIMERIVQGITYDKIALEIEVSRR 181 + + AQ D FR + L + E I++ + QG + IAL +++S + Sbjct: 121 EALLDADMAQNVLDDFRDKREELPSEKHADLNERETMILKLLAQGFSNQDIALRLDISEK 180 Query: 182 SIDNYLRKIYVKLEVSTRAQA 202 ++ N L +I+ KL+++ R QA Sbjct: 181 TVRNRLSEIFTKLQLNNRTQA 201 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,934,395 Number of extensions: 567787 Number of successful extensions: 2189 Number of sequences better than 1.0e-05: 112 Number of HSP's gapped: 2184 Number of HSP's successfully gapped: 112 Length of query: 218 Length of database: 38,378,431 Length adjustment: 102 Effective length of query: 116 Effective length of database: 26,614,363 Effective search space: 3087266108 Effective search space used: 3087266108 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 113 (48.1 bits)