BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0282.0006.p
         (57 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC1941 [K] COG2002 Regulators of stationary/sporulation gene ex...    54   4e-08
CAC3647 [K] COG2002 Regulators of stationary/sporulation gene ex...    54   5e-08
CAC0310 [K] COG2002 Regulators of stationary/sporulation gene ex...    52   2e-07

>CAC1941 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 79

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%)

Query: 1  MNEGDPVEILVQGDHIILERYRPKCVFCGSMEGVSEYKDRYICADCLTEMTQ 52
          + E D +EI V G+ I+L++Y P CVFCG    V  YK + IC  CL E+ +
Sbjct: 28 IAEKDALEIYVDGEQIVLKKYNPACVFCGEASDVINYKGKKICKKCLKELRR 79


>CAC3647 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 81

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 1  MNEGDPVEILVQGDHIILERYRPKCVFCGSMEGVSEYKDRYICADCLTEMTQ 52
          + E D +EI V G+ IIL++Y+P C+FCG    V  YK + IC  CL ++ +
Sbjct: 28 IAEKDALEIYVDGEQIILKKYQPACIFCGDARDVINYKGKNICQSCLNQLKE 79


>CAC0310 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 81

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)

Query: 1  MNEGDPVEILVQGDHIILERYRPKCVFCGSMEGVSEYKDRYICADCLTEMTQ 52
          + E D +EI V G+ IIL++Y P C+FCG    V  Y+ + IC  CL E+ +
Sbjct: 28 IAEKDALEIYVDGEQIILKKYEPACIFCGDASDVINYRGKNICKHCLEELKE 79


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,161,118
Number of extensions: 110746
Number of successful extensions: 176
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 4
Length of query: 57
Length of database: 38,378,431
Length adjustment: 30
Effective length of query: 27
Effective length of database: 34,918,411
Effective search space: 942797097
Effective search space used: 942797097
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)