BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0280.0030.p
         (176 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2402 [H] COG0452 Phosphopantothenoylcysteine synthetase/decarb...   224   5e-59
BS_spoVFB [H] COG0452 Phosphopantothenoylcysteine synthetase/dec...   211   3e-55

>BH2402 [H] COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase
          Length = 346

 Score =  224 bits (571), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 11/174 (6%), Positives = 40/174 (22%)

Query: 1   MPQIQRFMEGGANVVPIVSASVLNTDTRFGTSENWLKQLKEITGNDIISTIVEAEPLGPS 60
             +     +  A +   V+  +   D           + + +T   + + + +       
Sbjct: 23  FGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKL 82

Query: 61  KLLDVLTIAPCTGNTTSKLANAMTDSPVLMAAKAQLRNSRPLVLAISTNDGLGLNAANIA 120
            +   ++      +   +   A+    +  A    L+  +   L +              
Sbjct: 83  IIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFG 142

Query: 121 KLLVAKNIYFVPFGQDNPQGKPNSLVAQMDLIPEACFAALQGQQLQPMIIERFH 174
           KL  +           +             +             ++ + +   H
Sbjct: 143 KLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKH 196


>BS_spoVFB [H] COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase
          Length = 346

 Score =  211 bits (538), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 7/174 (4%), Positives = 18/174 (10%)

Query: 1   MPQIQRFMEGGANVVPIVSASVLNTDTRFGTSENWLKQLKEITGNDIISTIVEAEPLGPS 60
             Q             +     L             +                       
Sbjct: 24  GEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLI 83

Query: 61  KLLDVLTIAPCTGNTTSKLANAMTDSPVLMAAKAQLRNSRPLVLAISTNDGLGLNAANIA 120
               V   +                +       +  R     +     +           
Sbjct: 84  IASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGK 143

Query: 121 KLLVAKNIYFVPFGQDNPQGKPNSLVAQMDLIPEACFAALQGQQLQPMIIERFH 174
                 +        D          A              G      + ++  
Sbjct: 144 LGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHD 197


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,313,828
Number of extensions: 488021
Number of successful extensions: 896
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 897
Number of HSP's successfully gapped: 2
Length of query: 176
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 77
Effective length of database: 26,960,365
Effective search space: 2075948105
Effective search space used: 2075948105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)