BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0280.0024.p
         (270 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2397 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases   311   6e-85
BS_ymfB [OU] COG0740 Protease subunit of ATP-dependent Clp prote...   301   5e-82
CAC1811 [OU] COG0740 Protease subunit of ATP-dependent Clp prote...   242   4e-64

>BH2397 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases
          Length = 256

 Score =  311 bits (798), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 151/207 (72%), Positives = 180/207 (86%), Gaps = 1/207 (0%)

Query: 47  VKELGQTAVPTGE-PDIFCITIIGQIEGHFVLPPHNKTTKYEHIIPQLVAAEQSKTIKGL 105
           +++LGQT VP  E  +I CIT++GQIEGH  LPP NKTTKYEHIIPQLVAAEQ+K I+GL
Sbjct: 36  IQQLGQTNVPEMEQSNIHCITVVGQIEGHMQLPPQNKTTKYEHIIPQLVAAEQNKKIEGL 95

Query: 106 LIILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGVPIAVASSYSIIAESATMTI 165
           LIILNTVGGDVEAGLAIAEM+A++SKPTVT+V+GGGHSIGVPIAVA++YS IAE+ATMTI
Sbjct: 96  LIILNTVGGDVEAGLAIAEMVATMSKPTVTLVLGGGHSIGVPIAVAANYSFIAETATMTI 155

Query: 166 HPIRMNGLVIGVPQTFEYMERMQERMVRFVTSHSRISEQQFKDLMFRTGELNRDIGTAVG 225
           HP+R+ GLVIGVPQTFEY+++MQER+V FVT HS ISE++FK+LMF  G L RDIGT V 
Sbjct: 156 HPVRLTGLVIGVPQTFEYLDKMQERVVSFVTKHSHISEEKFKELMFSKGNLTRDIGTNVI 215

Query: 226 GYDAVKYGLMDEVGGIGAALSRLNGMI 252
           G DAV YGL+DEVGGIG A+ +L  +I
Sbjct: 216 GTDAVTYGLIDEVGGIGKAMQKLTELI 242


>BS_ymfB [OU] COG0740 Protease subunit of ATP-dependent Clp proteases
          Length = 153

 Score =  301 bits (772), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 0/208 (0%), Positives = 0/208 (0%), Gaps = 2/208 (0%)

Query: 47  VKELGQTAVPT--GEPDIFCITIIGQIEGHFVLPPHNKTTKYEHIIPQLVAAEQSKTIKG 104
            + +   A+            T++                    I      A        
Sbjct: 22  EETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLR 81

Query: 105 LLIILNTVGGDVEAGLAIAEMIASLSKPTVTVVIGGGHSIGVPIAVASSYSIIAESATMT 164
            L  +                          +      S  V  ++    S       M 
Sbjct: 82  FLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMI 141

Query: 165 IHPIRMNGLVIGVPQTFEYMERMQERMVRFVTSHSRISEQQFKDLMFRTGELNRDIGTAV 224
                                                                       
Sbjct: 142                                                              201

Query: 225 GGYDAVKYGLMDEVGGIGAALSRLNGMI 252
                                       
Sbjct: 202                              229


>CAC1811 [OU] COG0740 Protease subunit of ATP-dependent Clp proteases
          Length = 226

 Score =  242 bits (618), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 120/192 (62%), Positives = 148/192 (77%)

Query: 65  ITIIGQIEGHFVLPPHNKTTKYEHIIPQLVAAEQSKTIKGLLIILNTVGGDVEAGLAIAE 124
           I IIGQIEGH +L    KTTKYE IIP+L+  E +  IKG+LIILNT+GGDVEAGLAIAE
Sbjct: 34  IQIIGQIEGHGILSSQTKTTKYEEIIPRLMNVEYNPEIKGVLIILNTIGGDVEAGLAIAE 93

Query: 125 MIASLSKPTVTVVIGGGHSIGVPIAVASSYSIIAESATMTIHPIRMNGLVIGVPQTFEYM 184
           MI SLSKPTV++VIGGGHSIGVP+A +S+YS I+ +ATM IHPIRMNGL+IGVPQTF+Y 
Sbjct: 94  MIRSLSKPTVSLVIGGGHSIGVPLATSSNYSFISPTATMIIHPIRMNGLIIGVPQTFQYF 153

Query: 185 ERMQERMVRFVTSHSRISEQQFKDLMFRTGELNRDIGTAVGGYDAVKYGLMDEVGGIGAA 244
            +MQER+  F+   S+I ++   +LM +T EL  D+GT + G  AVKYGL+D VGGI  A
Sbjct: 154 NKMQERISEFIVRTSKIKKETLTELMLKTDELLNDMGTILIGKQAVKYGLIDSVGGIKEA 213

Query: 245 LSRLNGMIAGET 256
           LS+L  +I   T
Sbjct: 214 LSKLKELIEDST 225


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,847,322
Number of extensions: 839480
Number of successful extensions: 1934
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1935
Number of HSP's successfully gapped: 3
Length of query: 270
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 165
Effective length of database: 26,268,361
Effective search space: 4334279565
Effective search space used: 4334279565
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 115 (48.9 bits)