BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0280.0021.p
         (287 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1631_2 [M] COG3773 Cell wall hydrolyses involved in spore germ...   188   7e-48
BS_sleB_2 [M] COG3773 Cell wall hydrolyses involved in spore ger...   188   7e-48
CAC0686_2 [M] COG3773 Cell wall hydrolyses involved in spore ger...   151   1e-36
CAC3081 [M] COG3773 Cell wall hydrolyses involved in spore germi...   122   8e-28
BS_ykvT [M] COG3773 Cell wall hydrolyses involved in spore germi...   107   2e-23

>BH1631_2 [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 132

 Score =  188 bits (478), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 86/118 (72%), Positives = 100/118 (84%)

Query: 169 GLSENDLRIMANAVYGESRGEPFEGQVAVAAVILNRVKSPNFPNTPSGVIFQPGAFTAVA 228
           G S+ND+++MA AVYGE+RGEP+ GQVAVAAVILNR+ SP FP+  SGVIF+P AFTAVA
Sbjct: 14  GYSDNDIQLMAQAVYGEARGEPYVGQVAVAAVILNRLNSPTFPDNVSGVIFEPLAFTAVA 73

Query: 229 DGQIYLEPNEQARKAVQQALNGWDPSGGCIYYFNPKTATSKWIWSRPQVKTIGQHIFC 286
           DGQIY+ P+E AR+AV  ALNG DPSGG  YYFNP TATS WIWSRPQ+K IG+HIFC
Sbjct: 74  DGQIYMTPDETARRAVLDALNGQDPSGGATYYFNPDTATSGWIWSRPQIKRIGKHIFC 131


>BS_sleB_2 [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 125

 Score =  188 bits (478), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 84/118 (71%), Positives = 101/118 (85%)

Query: 169 GLSENDLRIMANAVYGESRGEPFEGQVAVAAVILNRVKSPNFPNTPSGVIFQPGAFTAVA 228
           G S ND+R++A AVYGE+RGEP+EGQVA+AAVILNR+ SP FPN+ +GVIF+P AFTAVA
Sbjct: 7   GFSNNDIRLLAQAVYGEARGEPYEGQVAIAAVILNRLNSPLFPNSVAGVIFEPLAFTAVA 66

Query: 229 DGQIYLEPNEQARKAVQQALNGWDPSGGCIYYFNPKTATSKWIWSRPQVKTIGQHIFC 286
           DGQIY++PNE AR+AV  A+NGWDPS   +YYFNP TATS WIW RPQ+K IG+HIFC
Sbjct: 67  DGQIYMQPNETAREAVLDAINGWDPSEEALYYFNPDTATSPWIWGRPQIKRIGKHIFC 124


>CAC0686_2 [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 128

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/115 (60%), Positives = 89/115 (77%), Gaps = 4/115 (3%)

Query: 174 DLRIMANAVYGESRGEPFEGQVAVAAVILNRVKSPNFPNTPSGVIFQPGAFTAVADGQIY 233
           ++ ++A  + GE+RGEP+ GQVAV A ++NR K+P FP+T +GVI+QPGAFTA+ DGQI+
Sbjct: 15  NVTLLARLINGEARGEPYAGQVAVGATVINRTKNPKFPSTIAGVIYQPGAFTAIVDGQIH 74

Query: 234 --LEPNEQARKAVQQALNGWDPSGGCIYYFNPKTATSKWIWSRPQVKTIGQHIFC 286
             +EPN    +A + ALNGWDPSGG IYYFNP TATS WIWSRP +  IG+H FC
Sbjct: 75  ATMEPNSI--RAARDALNGWDPSGGAIYYFNPATATSGWIWSRPLIIIIGKHRFC 127


>CAC3081 [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 194

 Score =  122 bits (305), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 84/124 (67%), Gaps = 2/124 (1%)

Query: 164 SGNTMGLSENDLRIMANAVYGESRGEPFEGQVAVAAVILNRVKSPNFPNTPSGVIFQPGA 223
            GN++ ++ ND+ +MA  VY ES  EP+EG+VAVA+VILNR+++P FP +   VI Q  A
Sbjct: 65  DGNSIYITNNDINLMAQVVYAESCSEPYEGKVAVASVILNRLQNPEFPKSIGDVIKQKYA 124

Query: 224 FTAVADGQIYLEPNEQARKAVQQALNGWDPSGGCIYYFNPKTATSKWI--WSRPQVKTIG 281
           F+ + DG+I + PN++   AV  AL+G DP+   +Y++NP+ +TS W+    +  VK IG
Sbjct: 125 FSCIRDGKIEVTPNQECYNAVMDALHGKDPTPKAMYFYNPRISTSSWMNNIQKENVKVIG 184

Query: 282 QHIF 285
            H+F
Sbjct: 185 NHVF 188


>BS_ykvT [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 208

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 82/117 (70%)

Query: 171 SENDLRIMANAVYGESRGEPFEGQVAVAAVILNRVKSPNFPNTPSGVIFQPGAFTAVADG 230
           ++++  +++  V+ E++GE ++G+VAVA+V+LNR +   FP+T  GVI+Q  AF  VA+G
Sbjct: 92  TQSEKELLSRLVHAEAKGESYKGKVAVASVVLNRTEKKGFPDTIRGVIYQKNAFEPVANG 151

Query: 231 QIYLEPNEQARKAVQQALNGWDPSGGCIYYFNPKTATSKWIWSRPQVKTIGQHIFCM 287
            I  +P++++ +A ++AL+  +     I+++NPKTA+  WI SR  V+ IG+H+F +
Sbjct: 152 SINQKPDKESIEAAEEALSSKNRETDAIFFYNPKTASDNWIRSRKIVEKIGRHVFAV 208


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 19,847,265
Number of extensions: 725010
Number of successful extensions: 897
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 22
Length of query: 287
Length of database: 38,378,431
Length adjustment: 105
Effective length of query: 182
Effective length of database: 26,268,361
Effective search space: 4780841702
Effective search space used: 4780841702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 115 (48.9 bits)