BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0280.0006.p
         (244 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BB0505 [S] COG1692 Uncharacterized protein conserved in bacteria      174   2e-43
BB0471 [S] COG1692 Uncharacterized protein conserved in bacteria       82   8e-16

>BB0505 [S] COG1692 Uncharacterized protein conserved in bacteria
          Length = 262

 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/235 (38%), Positives = 135/235 (57%), Gaps = 1/235 (0%)

Query: 2   LPTLKDKYQPHIIIVNGENAAAGRGITSAIANEFFNWGVHGITMGNHTWDNKDIFEFIDD 61
           L  +K+KY+  ++I NGEN++ G GIT  IAN  F  GV+ IT GNH + N  I ++++ 
Sbjct: 27  LKNIKNKYRIDLVIANGENSSNGFGITPEIANNLFRSGVNVITTGNHVYSNCKINDYLNK 86

Query: 62  EPRLIRPANFPPGTPGRGYTVIKANGKQLALVNLQGRTFLPAI-DDPFRIGEEIAQELRQ 120
           +  ++RP NF     G GY  +    +++A+VN+QG   +  I  +PF   +++   L  
Sbjct: 87  QTYILRPNNFSDLLDGHGYCFLTIRDEKVAVVNVQGVLNMNFIVKNPFDNTKKLVNMLSN 146

Query: 121 KHKCILVDFHAEATSEKIAMGYYLDGLASIVVGTHTHVQSNDEVILPGGTAYLTDAGMVG 180
           K K I VDFHAE+  EK + GY+L+G  + VVGTHTHV + DE IL  GTAY++D GM G
Sbjct: 147 KAKTIFVDFHAESNYEKESFGYFLNGFVTGVVGTHTHVMTQDERILSKGTAYISDIGMTG 206

Query: 181 SREGILGMEKDAVLYKFTTQLPARFVVDEGKWQLHGLFAELDEATGKATRVEKIR 235
               ++G   D  L       P R  V E    L G+    +  TG+A ++E+I+
Sbjct: 207 GLNSVIGFNPDISLKGLLEYTPLRAEVVEDDTILQGVIITSNLKTGRALKIERIQ 261


>BB0471 [S] COG1692 Uncharacterized protein conserved in bacteria
          Length = 273

 Score = 82.0 bits (201), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 12/228 (5%)

Query: 15  IVNGENAAAG-RGITSAIANEFFNWGVHGITMGNHTWDNKDIFEFIDDEPRLIRPANFPP 73
           +++G N   G RG+    A     +G+  +T+G + +   D+ + +D    +++P N P 
Sbjct: 36  VISGNNFTTGLRGLGKKHAFLLKKYGIDVLTLGENAFARPDLSDDLDKYNFILKPLNCPA 95

Query: 74  GTPGRGYTVIKANGKQLALVNLQGRTFLP--AIDDPFRIGEEIAQELRQKHKCILVDFHA 131
              G  Y +   NGK+LA++ + G+T +     + PF   +   Q ++ +   I+V F +
Sbjct: 96  KLKGYSYFIYNINGKKLAVIRIVGQTGITKYKFNHPFYSFDFFYQRIKMQTNNIIVLFDS 155

Query: 132 EATSEKIAMGYYLDGLASIVVGTHTHVQSNDEVILPGGTAYLTDAGMVGSREGILGMEKD 191
             T+E  A+ +YL    S  +GT   + + D  IL   TA +TD G VGS + ++G   D
Sbjct: 156 NTTAEVNALFFYLKSRVSACLGTGKRILTADLRILD-NTAIITDLGRVGSLDSVIGYSPD 214

Query: 192 AVLYKFTTQ-LPARFVVDEGKWQ---LHGLFAELDEATGKATRVEKIR 235
             + KF    L  +F      W+    +G+  ++DE  G +  VE +R
Sbjct: 215 LEVDKFLKGFLNQKF---NESWEGLGFNGVLIDIDE-NGHSFSVEIVR 258


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 20,160,683
Number of extensions: 919184
Number of successful extensions: 1978
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1975
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 140
Effective length of database: 26,383,695
Effective search space: 3693717300
Effective search space used: 3693717300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)