BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0280.0005.p
         (86 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC1817 [S] COG2359 Uncharacterized protein conserved in bacteria     154   3e-38
TM0192 [S] COG2359 Uncharacterized protein conserved in bacteria      132   9e-32
STM0192 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transp...   132   9e-32
TM1059 [S] COG2359 Uncharacterized protein conserved in bacteria      130   4e-31
CAC1750 [S] COG2359 Uncharacterized protein conserved in bacteria     129   9e-31

>CAC1817 [S] COG2359 Uncharacterized protein conserved in bacteria
          Length = 86

 Score =  154 bits (390), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/86 (87%), Positives = 85/86 (98%)

Query: 1  MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60
          M+VLKVSAKSNPNSVAGALAGVLRERG+AE+QAIGAGA+NQA+KA+AIARGFVAPSG+DL
Sbjct: 1  MEVLKVSAKSNPNSVAGALAGVLRERGAAEIQAIGAGAINQAIKAIAIARGFVAPSGIDL 60

Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86
          +CIPAFTDI IDGE+RTAIKLIV+PR
Sbjct: 61 VCIPAFTDIDIDGEERTAIKLIVQPR 86


>TM0192 [S] COG2359 Uncharacterized protein conserved in bacteria
          Length = 87

 Score =  132 bits (333), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 78/86 (90%)

Query: 1  MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60
          M+VLKV++ SNPN VAGALAGV+RE+G AELQAIGAGA+NQAVKA+AIARG++APSG++L
Sbjct: 1  MEVLKVASNSNPNKVAGALAGVIREKGKAELQAIGAGAVNQAVKAIAIARGYLAPSGINL 60

Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86
          +C+PAF ++ I+GE RTAIK IV P+
Sbjct: 61 VCVPAFAEVQINGETRTAIKFIVFPK 86


>STM0192 [PH] COG1120 ABC-type cobalamin/Fe3+-siderophores transport
          systems, ATPase components
          Length = 265

 Score =  132 bits (333), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 5/86 (5%), Positives = 18/86 (20%)

Query: 1  MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60
          M    + + +     + A     R           AG +   +      +  +       
Sbjct: 1  MQENHIHSDTTFALRSVAFRVPGRTLLHPLSLTFPAGRVTGLIGHNGSGKSTLLKMLGRH 60

Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86
                  ++ +    +        +
Sbjct: 61 QPPSEGDILLDNQPLASWSSKAFARK 86


>TM1059 [S] COG2359 Uncharacterized protein conserved in bacteria
          Length = 87

 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 77/86 (89%)

Query: 1  MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60
          M+VLKVS+KS+PN VAGA+AGV+RE G AE+QAIGAGA+NQAVKA+AIARG++APSG+DL
Sbjct: 1  MEVLKVSSKSDPNKVAGAIAGVVREHGKAEIQAIGAGAVNQAVKAIAIARGYLAPSGIDL 60

Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86
          + +PAFTD+ I+ E RTAIK IV P+
Sbjct: 61 VFVPAFTDVEIENEKRTAIKFIVFPK 86


>CAC1750 [S] COG2359 Uncharacterized protein conserved in bacteria
          Length = 86

 Score =  129 bits (325), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 63/86 (73%), Positives = 74/86 (86%)

Query: 1  MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60
          M+VLKVSAKS P SVAGALA VLR   SAE+QA+GAGA+NQAVKA+AI RGFVAP+G+DL
Sbjct: 1  MEVLKVSAKSQPKSVAGALAAVLRNSNSAEVQAVGAGAINQAVKAIAITRGFVAPNGIDL 60

Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86
          + +PAF +I I+GEDRTAIK IVE R
Sbjct: 61 VVVPAFAEISIEGEDRTAIKFIVESR 86


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,724,733
Number of extensions: 202355
Number of successful extensions: 510
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 6
Length of query: 86
Length of database: 38,378,431
Length adjustment: 56
Effective length of query: 30
Effective length of database: 31,919,727
Effective search space: 957591810
Effective search space used: 957591810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)