BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0001.p (517 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM0820 [LKJ] COG0513 Superfamily II DNA and RNA helicases 404 e-112 ZrhlE [LKJ] COG0513 Superfamily II DNA and RNA helicases 404 e-112 rhlE [LKJ] COG0513 Superfamily II DNA and RNA helicases 404 e-112 ZrhlE [LKJ] COG0513 Superfamily II DNA and RNA helicases 404 e-112 ECs0875 [LKJ] COG0513 Superfamily II DNA and RNA helicases 404 e-112 >STM0820 [LKJ] COG0513 Superfamily II DNA and RNA helicases Length = 454 Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust. Identities = 198/385 (51%), Positives = 273/385 (70%), Gaps = 2/385 (0%) Query: 1 MTFNDLNLIPAILKALSQENYTSPTPIQEESIPAALAGRDVLGCAQTGTGKTAAFSLPII 60 M+F+ L L P IL+A++++ Y PTPIQ+++IPA L GRD++ AQTGTGKTA F+LP++ Sbjct: 1 MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 Q-LLSQQPSVTGGKRRIRSLILTPTRELALQISENIQAYSKFTNIRSTAIVGGVSQKAQE 119 Q L++ QP G +R +R+LILTPTRELA QI EN++ YSK+ NIRS + GGVS Q Sbjct: 61 QHLITHQPHAKG-RRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM 119 Query: 120 RALSQGADILIATPGRLIDLITQKHADLQYVQILVLDEADRMLDMGFIHDVKRIIAKMPS 179 L G D+L+ATPGRL+DL Q L ++ILVLDEADRMLDMGFIHD++R++AK+P+ Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPA 179 Query: 180 KKQTLFFSATMPTEISNLIKTLLVNPVKIEITPVSSTVDRIEQSVYLLENGNKQKQLNRL 239 K+Q L FSAT +I L + LL NP++IE+ ++ +++ Q V+ ++ K++ L+++ Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQM 239 Query: 240 LQDKSIVSALVFTRTKRGADRVTRDLTRNNITAQAIHGNKSQNDRQNALRNFKSGTTRVL 299 + + LVFTRTK GA+ + L ++ I + AIHGNKSQ R AL +FKSG RVL Sbjct: 240 IGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 300 VATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGVAISLCEAEEIPYLKD 359 VATDIAARG+DI+EL HV+N+ LPN+PE YVHRIGRTGRA +G A+SL +E L+D Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 Query: 360 IQKLIGKTIPEVKDHAYPMSESAQA 384 I+KL+ K IP + Y S +A Sbjct: 360 IEKLLKKEIPRITTPGYEPDPSIKA 384 >ZrhlE [LKJ] COG0513 Superfamily II DNA and RNA helicases Length = 454 Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/385 (51%), Positives = 272/385 (70%), Gaps = 2/385 (0%) Query: 1 MTFNDLNLIPAILKALSQENYTSPTPIQEESIPAALAGRDVLGCAQTGTGKTAAFSLPII 60 M+F+ L L P IL+A++++ Y PTPIQ+++IPA L GRD++ AQTGTGKTA F+LP++ Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 Q-LLSQQPSVTGGKRRIRSLILTPTRELALQISENIQAYSKFTNIRSTAIVGGVSQKAQE 119 Q L+++QP G +R +R+LILTPTRELA QI EN++ YSK+ NIRS + GGVS Q Sbjct: 61 QHLITRQPHAKG-RRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM 119 Query: 120 RALSQGADILIATPGRLIDLITQKHADLQYVQILVLDEADRMLDMGFIHDVKRIIAKMPS 179 L G D+L+ATPGRL+DL Q L V+ILVLDEADRMLDMGFIHD++R++ K+P+ Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179 Query: 180 KKQTLFFSATMPTEISNLIKTLLVNPVKIEITPVSSTVDRIEQSVYLLENGNKQKQLNRL 239 K+Q L FSAT +I L + LL NP++IE+ ++ D++ Q V+ ++ K++ L+ + Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM 239 Query: 240 LQDKSIVSALVFTRTKRGADRVTRDLTRNNITAQAIHGNKSQNDRQNALRNFKSGTTRVL 299 + + LVFTRTK GA+ + L ++ I + AIHGNKSQ R AL +FKSG RVL Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 300 VATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGVAISLCEAEEIPYLKD 359 VATDIAARG+DI+EL HV+N+ LPN+PE YVHRIGRTGRA +G A+SL +E L+D Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 Query: 360 IQKLIGKTIPEVKDHAYPMSESAQA 384 I+KL+ K IP + Y S +A Sbjct: 360 IEKLLKKEIPRIAIPGYEPDPSIKA 384 >rhlE [LKJ] COG0513 Superfamily II DNA and RNA helicases Length = 454 Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/385 (51%), Positives = 272/385 (70%), Gaps = 2/385 (0%) Query: 1 MTFNDLNLIPAILKALSQENYTSPTPIQEESIPAALAGRDVLGCAQTGTGKTAAFSLPII 60 M+F+ L L P IL+A++++ Y PTPIQ+++IPA L GRD++ AQTGTGKTA F+LP++ Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 Q-LLSQQPSVTGGKRRIRSLILTPTRELALQISENIQAYSKFTNIRSTAIVGGVSQKAQE 119 Q L+++QP G +R +R+LILTPTRELA QI EN++ YSK+ NIRS + GGVS Q Sbjct: 61 QHLITRQPHAKG-RRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM 119 Query: 120 RALSQGADILIATPGRLIDLITQKHADLQYVQILVLDEADRMLDMGFIHDVKRIIAKMPS 179 L G D+L+ATPGRL+DL Q L V+ILVLDEADRMLDMGFIHD++R++ K+P+ Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179 Query: 180 KKQTLFFSATMPTEISNLIKTLLVNPVKIEITPVSSTVDRIEQSVYLLENGNKQKQLNRL 239 K+Q L FSAT +I L + LL NP++IE+ ++ D++ Q V+ ++ K++ L+ + Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM 239 Query: 240 LQDKSIVSALVFTRTKRGADRVTRDLTRNNITAQAIHGNKSQNDRQNALRNFKSGTTRVL 299 + + LVFTRTK GA+ + L ++ I + AIHGNKSQ R AL +FKSG RVL Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 300 VATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGVAISLCEAEEIPYLKD 359 VATDIAARG+DI+EL HV+N+ LPN+PE YVHRIGRTGRA +G A+SL +E L+D Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 Query: 360 IQKLIGKTIPEVKDHAYPMSESAQA 384 I+KL+ K IP + Y S +A Sbjct: 360 IEKLLKKEIPRIAIPGYEPDPSIKA 384 Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/385 (51%), Positives = 272/385 (70%), Gaps = 2/385 (0%) Query: 1 MTFNDLNLIPAILKALSQENYTSPTPIQEESIPAALAGRDVLGCAQTGTGKTAAFSLPII 60 M+F+ L L P IL+A++++ Y PTPIQ+++IPA L GRD++ AQTGTGKTA F+LP++ Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 Q-LLSQQPSVTGGKRRIRSLILTPTRELALQISENIQAYSKFTNIRSTAIVGGVSQKAQE 119 Q L+++QP G +R +R+LILTPTRELA QI EN++ YSK+ NIRS + GGVS Q Sbjct: 61 QHLITRQPHAKG-RRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM 119 Query: 120 RALSQGADILIATPGRLIDLITQKHADLQYVQILVLDEADRMLDMGFIHDVKRIIAKMPS 179 L G D+L+ATPGRL+DL Q L V+ILVLDEADRMLDMGFIHD++R++ K+P+ Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179 Query: 180 KKQTLFFSATMPTEISNLIKTLLVNPVKIEITPVSSTVDRIEQSVYLLENGNKQKQLNRL 239 K+Q L FSAT +I L + LL NP++IE+ ++ D++ Q V+ ++ K++ L+ + Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM 239 Query: 240 LQDKSIVSALVFTRTKRGADRVTRDLTRNNITAQAIHGNKSQNDRQNALRNFKSGTTRVL 299 + + LVFTRTK GA+ + L ++ I + AIHGNKSQ R AL +FKSG RVL Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 300 VATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGVAISLCEAEEIPYLKD 359 VATDIAARG+DI+EL HV+N+ LPN+PE YVHRIGRTGRA +G A+SL +E L+D Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 Query: 360 IQKLIGKTIPEVKDHAYPMSESAQA 384 I+KL+ K IP + Y S +A Sbjct: 360 IEKLLKKEIPRIAIPGYEPDPSIKA 384 >ECs0875 [LKJ] COG0513 Superfamily II DNA and RNA helicases Length = 455 Score = 404 bits (1038), Expect = e-112, Method: Compositional matrix adjust. Identities = 199/385 (51%), Positives = 272/385 (70%), Gaps = 2/385 (0%) Query: 1 MTFNDLNLIPAILKALSQENYTSPTPIQEESIPAALAGRDVLGCAQTGTGKTAAFSLPII 60 M+F+ L L P IL+A++++ Y PTPIQ+++IPA L GRD++ AQTGTGKTA F+LP++ Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60 Query: 61 Q-LLSQQPSVTGGKRRIRSLILTPTRELALQISENIQAYSKFTNIRSTAIVGGVSQKAQE 119 Q L+++QP G +R +R+LILTPTRELA QI EN++ YSK+ NIRS + GGVS Q Sbjct: 61 QHLITRQPHAKG-RRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQM 119 Query: 120 RALSQGADILIATPGRLIDLITQKHADLQYVQILVLDEADRMLDMGFIHDVKRIIAKMPS 179 L G D+L+ATPGRL+DL Q L V+ILVLDEADRMLDMGFIHD++R++ K+P+ Sbjct: 120 MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPA 179 Query: 180 KKQTLFFSATMPTEISNLIKTLLVNPVKIEITPVSSTVDRIEQSVYLLENGNKQKQLNRL 239 K+Q L FSAT +I L + LL NP++IE+ ++ D++ Q V+ ++ K++ L+ + Sbjct: 180 KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHM 239 Query: 240 LQDKSIVSALVFTRTKRGADRVTRDLTRNNITAQAIHGNKSQNDRQNALRNFKSGTTRVL 299 + + LVFTRTK GA+ + L ++ I + AIHGNKSQ R AL +FKSG RVL Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299 Query: 300 VATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGVAISLCEAEEIPYLKD 359 VATDIAARG+DI+EL HV+N+ LPN+PE YVHRIGRTGRA +G A+SL +E L+D Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359 Query: 360 IQKLIGKTIPEVKDHAYPMSESAQA 384 I+KL+ K IP + Y S +A Sbjct: 360 IEKLLKKEIPRIAIPGYEPDPSIKA 384 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.316 0.131 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,316,127 Number of extensions: 1126276 Number of successful extensions: 4730 Number of sequences better than 1.0e-05: 165 Number of HSP's gapped: 4428 Number of HSP's successfully gapped: 167 Length of query: 517 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 406 Effective length of database: 25,576,357 Effective search space: 10384000942 Effective search space used: 10384000942 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 118 (50.1 bits)