BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0273.0012.p (254 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0418 [V] COG1136 ABC-type antimicrobial peptide transport sys... 168 6e-42 TM0705 [V] COG1136 ABC-type antimicrobial peptide transport syst... 167 1e-41 lolD [V] COG1136 ABC-type antimicrobial peptide transport system... 167 1e-41 CAC0319 [V] COG1136 ABC-type antimicrobial peptide transport sys... 167 2e-41 ZycfV [V] COG1136 ABC-type antimicrobial peptide transport syste... 165 6e-41 >lin0418 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 14/218 (6%), Positives = 47/218 (21%) Query: 6 IIQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSVTAG 65 + Q + ++D + ++ T + + + + Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 66 EVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGTPKREVKQ 125 + A + R +R + T P + A + ++ Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 126 RVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQGVAV 185 ++ + + + L + D + + Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 186 LDLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKV 223 L+ + A +A+ + + Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM 218 >TM0705 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 9/219 (4%), Positives = 36/219 (16%), Gaps = 2/219 (0%) Query: 5 AIIQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSVTA 64 ++L G + + + ++ Sbjct: 3 QAGIIRDLLIWLE-GHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSK 61 Query: 65 GEVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGTPKREVK 124 V F +Q+ L+ P + Sbjct: 62 SAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLG 121 Query: 125 QRVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQGVA 184 + + + ++++ + ++ Sbjct: 122 EFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGL 181 Query: 185 VLDLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKV 223 + + V T + ++ + Sbjct: 182 NETRPSQDKD-DEQEVFYTTALAQDQADGYVLTGHPVML 219 >lolD [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 15/218 (6%), Positives = 38/218 (17%), Gaps = 1/218 (0%) Query: 7 IQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSVTAGE 66 + + + E N+ K + + Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 67 VYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGTPKREVKQR 126 RL ++A + + + R + Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 127 VLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQGVAVL 186 M + V+ + F + G+ V Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 187 DLLTDMNT-GGQSIVMVTHDIKAACRANRLIFIRDGKV 223 T + + A +A+ + + Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM 218 >CAC0319 [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 10/217 (4%), Positives = 38/217 (17%), Gaps = 1/217 (0%) Query: 7 IQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSVTAGE 66 ++L +Q ++ N+ + + + + + Sbjct: 5 GIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAV 64 Query: 67 VYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGTPKREVKQR 126 F +Q+ L+ P + + Sbjct: 65 -ALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRLGEF 123 Query: 127 VLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQGVAVL 186 + + ++++ + ++ Sbjct: 124 TMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYGLNE 183 Query: 187 DLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKV 223 + Q + T + L Sbjct: 184 TRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVMLQ 220 >ZycfV [V] COG1136 ABC-type antimicrobial peptide transport system, ATPase component Length = 289 Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 15/218 (6%), Positives = 38/218 (17%), Gaps = 1/218 (0%) Query: 7 IQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSVTAGE 66 + + + E N+ K + + Sbjct: 1 MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLS 60 Query: 67 VYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGTPKREVKQR 126 RL ++A + + + R + Sbjct: 61 KSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRSPEWSAFGIRPPLRL 120 Query: 127 VLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQGVAVL 186 M + V+ + F + G+ V Sbjct: 121 GEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGNAPTIPPVLYG 180 Query: 187 DLLTDMNT-GGQSIVMVTHDIKAACRANRLIFIRDGKV 223 T + + A +A+ + + Sbjct: 181 LNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM 218 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,144,100 Number of extensions: 705309 Number of successful extensions: 16151 Number of sequences better than 1.0e-05: 1747 Number of HSP's gapped: 14300 Number of HSP's successfully gapped: 1836 Length of query: 254 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 150 Effective length of database: 26,383,695 Effective search space: 3957554250 Effective search space used: 3957554250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)