BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0273.0007.p
         (152 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC2762_2 [S] COG3976 Uncharacterized protein conserved in bacteria    52   3e-07
CAC2767 [S] COG3976 Uncharacterized protein conserved in bacteria      52   5e-07

>CAC2762_2 [S] COG3976 Uncharacterized protein conserved in bacteria
          Length = 132

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 55/97 (56%), Gaps = 9/97 (9%)

Query: 54  KLRNGIYVGQFTGTKDHFRDTKVQVTIRGGQISDIQILKGALDKQGKPLELKKGQSIADL 113
           K ++G Y    TG   + +   V VTI+  +IS+I++L         P   ++  S+   
Sbjct: 45  KYKDGTYTASGTGFSPNLQ---VSVTIKDNKISNIELLS----NNETPKFFERASSVVP- 96

Query: 114 FDHVIQSQSLQVDVISGATLTSKAHLKALENALKQAQ 150
            D +I++QS  VD +SGAT +S   ++A++NAL++A+
Sbjct: 97  -DEIIKAQSTNVDAVSGATRSSNGIIEAVQNALEKAK 132


>CAC2767 [S] COG3976 Uncharacterized protein conserved in bacteria
          Length = 133

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 12/104 (11%)

Query: 49  DVDFKKLRNGIYVGQFTGTKDHFRDTKVQVTIRGGQISDIQILKGALDKQGKPLELKKGQ 108
           +V   K+++G Y+G +      F   KV+V I+  +I+ I++L+   ++ GK  E+    
Sbjct: 42  EVALSKVKDGNYIGSYDA---DFVQAKVKVEIKCHRITSIKLLEHKTER-GKRAEV---- 93

Query: 109 SIADLFDHVIQSQSLQVDVISGATLTSKAHLKALENALKQAQTE 152
               +   V+++QSL+VD I+GAT +SK  LK++E AL++ + E
Sbjct: 94  ----IPYMVVKAQSLKVDTITGATNSSKVILKSIEKALEKGENE 133


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,870,587
Number of extensions: 309934
Number of successful extensions: 523
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 2
Length of query: 152
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 55
Effective length of database: 27,191,033
Effective search space: 1495506815
Effective search space used: 1495506815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)