BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0273.0005.p
         (150 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sll1675 [E] COG0346 Lactoylglutathione lyase and related lyases        50   1e-06

>sll1675 [E] COG0346 Lactoylglutathione lyase and related lyases
          Length = 150

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 18/130 (13%)

Query: 34  LNWITLRVRDLEASLNFYHGILGL--------PIERRFESRGKQIVMLGTAEQPKVELIQ 85
           ++ I L V+D+E S +FY  ILGL        P+  +      ++    T +   ++L  
Sbjct: 15  VHHIALNVKDMEKSCHFYGHILGLKPLAGEEIPLTLKTMVEEGKVSNFITPDGTVIDLFA 74

Query: 86  A---NDQAVKPECGVS----IGFEV--KSLDEAIEYLKSRGIPVLRGPVTPNPQLRFFYI 136
               +  AV P    +    + F++  +  D+AI  L++ G+ +  GPVT  P  R  Y 
Sbjct: 75  TPNLSPPAVDPHQSFTRTDHLAFDIAPEQFDQAIAVLEAHGVTIASGPVT-RPTGRGIYF 133

Query: 137 LDPDGFEVQL 146
            DPDGF+V++
Sbjct: 134 YDPDGFQVEI 143


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,154,580
Number of extensions: 470134
Number of successful extensions: 1100
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1114
Number of HSP's successfully gapped: 1
Length of query: 150
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 53
Effective length of database: 27,191,033
Effective search space: 1441124749
Effective search space used: 1441124749
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)