BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0273.0004.p
         (250 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

aq_638 [K] COG0583 Transcriptional regulator                           64   3e-10
MA3213 [L] COG0675 Transposase and inactivated derivatives             60   4e-09
PA4797 [L] COG3547 Transposase and inactivated derivatives             60   4e-09
RSp0478 [L] COG3328 Transposase and inactivated derivatives            60   4e-09
SMb20778 [L] COG3335 Transposase and inactivated derivatives           60   4e-09

>aq_638 [K] COG0583 Transcriptional regulator
          Length = 303

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 64/117 (54%), Gaps = 5/117 (4%)

Query: 1   VVDFEWYRSFCTIYKHNSVSEAAKARIMTQPAMSQHLASLEAEVGEALFIRTSRKIIPTE 60
           ++D    ++F T+ +  S S+A++   +TQPA++Q + +LE  VG  LF R   +++ TE
Sbjct: 1   MIDISKLKTFVTVAELGSFSKASEVLYITQPAVTQQIKALEKTVGAKLFQRQGGRMVLTE 60

Query: 61  RGKQLYSQLAPLI----ESLEETTMNFKSASLPTLSSIKIGTPHEFYTEKVLPQLHK 113
            GK++Y ++A L+    E L E     K     TL  +   TP E+   K++ + HK
Sbjct: 61  EGKRIY-EIAKLLLNSYEGLMEEIARIKKDLKDTLFLVLSATPSEYIIPKIIAEFHK 116


>MA3213 [L] COG0675 Transposase and inactivated derivatives
          Length = 121

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 8/115 (6%), Positives = 24/115 (20%), Gaps = 1/115 (0%)

Query: 2   VDFEWYRSFCTIYKHNSVSEAAKARIMTQPAMSQHLASLEAEVGEALFIRTSRKIIPTER 61
           +      S     +        +       A++    +L        + R     + +  
Sbjct: 1   MRLSQLLSDLNGIEIGFALCGTRRDRDINAAINIKSIALRYGNNSPYYGRIKPADLFSAG 60

Query: 62  GKQLYSQLAPLIESLEETTMNFKSASLPTLSSIKIG-TPHEFYTEKVLPQLHKCK 115
             +       + +    T   +   S   +S   I  +            +    
Sbjct: 61  NVRSRKNNRIVGKLFHITKNIYNKLSPDPVSGNSIFRSSIIQDWGASSRAVRTHI 115


>PA4797 [L] COG3547 Transposase and inactivated derivatives
          Length = 338

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 2/115 (1%), Positives = 20/115 (17%), Gaps = 1/115 (0%)

Query: 2   VDFEWYRSFCTIYKHNSVSEAAKARIMTQPAMSQHLASLEAEVGEALFIRTSRKIIPTER 61
           ++                       ++ +  + +              +           
Sbjct: 1   MNLSRIGLDLAKQVFQVHGVDRHEHVVCRRQLKRAQVRDFFRQLPPCLVAMEACGSAHYW 60

Query: 62  GKQLYSQLAPLIESLEETTMNFKSASLPTLSSIKIG-TPHEFYTEKVLPQLHKCK 115
            ++L      +     +    +           +         + + +P     +
Sbjct: 61  ARELRELGHTVRLIAPQFVKPYVKGDKHDAHDAEAICEAASRPSMRYVPVKSAEQ 115


>RSp0478 [L] COG3328 Transposase and inactivated derivatives
          Length = 416

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 2/115 (1%), Positives = 12/115 (10%), Gaps = 1/115 (0%)

Query: 2   VDFEWYRSFCTIYKHNSVSEAAKARIMTQPAMSQHLASLEAEVGEALFIRTSRKIIPTER 61
           +  +       +    +                        +      +           
Sbjct: 1   MPRKLKAKPVDLPAIPAELLEQFGNGPMTAEAINAATLALKKALIERALSGEMNHHLGYP 60

Query: 62  GKQLYSQLAPLIESLEETTMNFKSASLPTLSSIKIG-TPHEFYTEKVLPQLHKCK 115
                        +               +   +      E        +  K  
Sbjct: 61  PGAAKPATVTNQRNGSGAKTVLTEDGPIRIEVPRDRDGSFEPLLIPKHERRFKGF 115


>SMb20778 [L] COG3335 Transposase and inactivated derivatives
          Length = 162

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 3/115 (2%), Positives = 12/115 (10%), Gaps = 1/115 (0%)

Query: 2   VDFEWYRSFCTIYKHNSVSEAAKARIMTQPAMSQHLASLEAEVGEALFIRTSRKIIPTER 61
                                                  +      +             
Sbjct: 1   WTKTNMAPLRGWAPRGERLVGYAPFGHWNTMTFVAALRADRVSAPFILDGPINGERFRIY 60

Query: 62  GKQLYSQLAPLIESLEETTMNFKSASLPTLSSIKIG-TPHEFYTEKVLPQLHKCK 115
            +Q+        + +    +          +  K G                +  
Sbjct: 61  VQQVLVPELKAGDIVILDNLGSHKGQEIRAAIRKAGARLFFLPKYSPDLNPIEKL 115


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 17,112,694
Number of extensions: 622981
Number of successful extensions: 2590
Number of sequences better than 1.0e-05: 1369
Number of HSP's gapped: 2595
Number of HSP's successfully gapped: 1369
Length of query: 250
Length of database: 38,378,431
Length adjustment: 104
Effective length of query: 146
Effective length of database: 26,383,695
Effective search space: 3852019470
Effective search space used: 3852019470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)