BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0272.0005.p (473 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ML1427 [G] COG1653 ABC-type sugar transport system, periplasmic ... 103 9e-22 lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic... 99 1e-20 Rv2041c [G] COG1653 ABC-type sugar transport system, periplasmic... 90 8e-18 MT2101 [G] COG1653 ABC-type sugar transport system, periplasmic ... 90 8e-18 PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic ... 78 3e-14 >ML1427 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 445 Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 98/356 (27%), Positives = 157/356 (44%), Gaps = 44/356 (12%) Query: 60 DKVTLKFTFWGSPQEKQAVEDAIKAFEAKNPNITIDSIHIPGTDFLQKLNAMIAGNEAPD 119 D L F F +P+E A + F+ +P+I + ++ + G +Q+L+ AG + PD Sbjct: 33 DDDALTFFFAANPEETNARMRIVGEFQRDHPDIKVRAV-LSGPGVMQQLSTFCAGGKCPD 91 Query: 120 LSYSAAWKL---KMGEEGLIYNFFDLMKDDPSIKKE---DYLQ--YAWWNWDTDKSAGPY 171 + AW L ++ + G++ + L+ D + E D ++ Y + ++ + A P Sbjct: 92 VLM--AWDLTYAELADRGVLLDLNTLLGQDKAFAAELKSDSIEPLYETFTFNGGQYAFPE 149 Query: 172 QASVVPSLMYNADLFKEAGVELPPTKAEEAWQWDEFVDTAKKLT-LDRNGKHPDDPGFDP 230 Q S L YN LF AGV+ PP E+ W + EF+DTA+ LT D +G+ Sbjct: 150 QWSG-NYLFYNKQLFTNAGVQPPPCTWEQPWSFTEFLDTARALTKRDSSGR--------- 199 Query: 231 KNIKQYGVKFSLSWLSYMP---LVLSNGGDYLT--KDGKEFGLSKPEATEAIQRIADLIN 285 + Q+G F +WLSY L+NG + + EA+Q DL N Sbjct: 200 --VTQWG--FVNTWLSYYTAGLFALNNGVPWSNPRMNPTHLNFDDDAFIEAVQFYCDLTN 255 Query: 286 VYHVAPSPVQASSIPAPATALQSRKVAMVIDGSWNH----------LDLSKANINWGVGV 335 Y VAP + + A A K A+ + G W + D++ I G Sbjct: 256 KYQVAPDASEQQWM-ATADLFSLGKAAIALGGHWRYQTFMRAEGLDFDVTSLPIGPSAGT 314 Query: 336 LPVLKDYKTFFLGGS-LIIFKSSKHPKEAWEFSKFLTDPQ-NVLELHQGLWMPQLK 389 +P + +G + L I SS ++AWEF KF T P L L++P L+ Sbjct: 315 VPATRSGACSDIGATGLAIAASSSRKEQAWEFVKFATGPAGQALIGESCLFVPVLQ 370 >lin0220 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/316 (26%), Positives = 139/316 (43%), Gaps = 25/316 (7%) Query: 60 DKVTLKFTFWGSPQEKQAVEDAIKAFEAKNPNITIDSIHIPGTDFLQKLNAMIAGNEAPD 119 DK + + + +P + +A++ +K FE +NP+I ++ I D+ KL IAG +APD Sbjct: 29 DKTEITYYQFSAPADGKALDKMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPD 88 Query: 120 ---LSYSAAWKLKMGEEGLIYNFFDLMKDDPSIKKEDYLQYAWWNWDTD-KSAGPYQASV 175 L+Y ++ E+G++ + ++ D + A+ + D K G ++ Sbjct: 89 AFELNYETF--MQYAEKGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFS 146 Query: 176 VPSLMYNADLFKEAGVELPPTKAEEAWQWDEFVDTAKKLTLDRNGKHPDDPGFDPKNIKQ 235 +YN DLF +AGVE P W W + AKKLT D KN K Sbjct: 147 NVVTIYNKDLFDKAGVEYPTAD----WTWKDEEAAAKKLT-------------DAKN-KV 188 Query: 236 YGVKFSLSWLSYMPLVLSNGGDYLTKDGKEFGLSKPEATEAIQRIADLINVYHVAPSPVQ 295 +G ++ + + NGG KD + ++ PE EA+ + + + VAPSP Sbjct: 189 WGTSQPVTMNEFFKVAAQNGGSIFDKDMTKTTINSPENVEALTHLTNEVTESKVAPSPSD 248 Query: 296 ASSIPAPATALQSRKVAMVIDGSWNHLDLSKANINWGVGVLPVLKDYKTFFLGGSLIIFK 355 S P + ++AM+ G W A W V V K T F + + K Sbjct: 249 LSG-QLPEDLFMNGQIAMLHTGIWLFDMFQDAPFKWDVQVEAGNKQKATHFFANGIGVSK 307 Query: 356 SSKHPKEAWEFSKFLT 371 S + A++F+ F++ Sbjct: 308 DSDKKEAAFKFASFMS 323 >Rv2041c [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 439 Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 45/349 (12%) Query: 64 LKFTFWGSPQEKQAVEDAIKAFEAKNPNITIDSIHIPGTDFLQKLNAMIAGNEAPDLSYS 123 L F F +P E + + F+ + P+I + ++ + G +Q+L AG + PD+ Sbjct: 38 LTFFFAANPDELRPRMRVVNEFQRRYPDIKVRAL-LSGPGVMQQLATFCAGGKCPDVLM- 95 Query: 124 AAWKL---KMGEEGLIYNFFDLMKDDPSIKKE---DYLQ--YAWWNWDTDKSAGPYQASV 175 AW+L ++ + G++ + L+ D + E D + Y + ++ + A P Q S Sbjct: 96 -AWELTYAELADRGVLLDLNTLLARDQAFAAELKSDSIGALYETFTFNGGQYAFPEQWSG 154 Query: 176 VPSLMYNADLFKEAGVELPPTKAEEAWQWDEFVDTAKKLTLDRNGKHPDDPGFDPKNIKQ 235 L YN LF +AGV PP E W + EF+D A+ LT + G+ D +Q Sbjct: 155 -NFLFYNKQLFDDAGVPPPPGSWERPWSFAEFLDAAQALT--KQGRSGRD--------RQ 203 Query: 236 YGVKFSLSWLSYMPLVLSNGGDYLTKDGKEFGLSKPEAT----------EAIQRIADLIN 285 +G F +W+S+ G + +G + + + T EA+Q ADL N Sbjct: 204 WG--FVNAWVSFYA-----AGLFAMNNGVPWSVPRMNPTHLNFDHDGFLEAVQFYADLTN 256 Query: 286 VYHVAPSPVQASSIPAPATALQSRKVAMVIDGSWNHLDLSKAN-INWGVGVLPVLKDYKT 344 + VAPS + S+ + A K + + G W + +A+ +++ V LP+ + Sbjct: 257 KHKVAPSAAEQQSM-STADLFSVGKAGIALAGHWRYQTFDRADGLDFDVAPLPIGPRGRA 315 Query: 345 FF--LGGS-LIIFKSSKHPKEAWEFSKFLTDP-QNVLELHQGLWMPQLK 389 +G + L I +S+ +AWEF KF T P L L++P L+ Sbjct: 316 ACSDIGVTGLAIAATSRRKDQAWEFVKFATGPVGQALIGESRLFVPVLR 364 >MT2101 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 439 Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 45/349 (12%) Query: 64 LKFTFWGSPQEKQAVEDAIKAFEAKNPNITIDSIHIPGTDFLQKLNAMIAGNEAPDLSYS 123 L F F +P E + + F+ + P+I + ++ + G +Q+L AG + PD+ Sbjct: 38 LTFFFAANPDELRPRMRVVNEFQRRYPDIKVRAL-LSGPGVMQQLATFCAGGKCPDVLM- 95 Query: 124 AAWKL---KMGEEGLIYNFFDLMKDDPSIKKE---DYLQ--YAWWNWDTDKSAGPYQASV 175 AW+L ++ + G++ + L+ D + E D + Y + ++ + A P Q S Sbjct: 96 -AWELTYAELADRGVLLDLNTLLARDQAFAAELKSDSIGALYETFTFNGGQYAFPEQWSG 154 Query: 176 VPSLMYNADLFKEAGVELPPTKAEEAWQWDEFVDTAKKLTLDRNGKHPDDPGFDPKNIKQ 235 L YN LF +AGV PP E W + EF+D A+ LT + G+ D +Q Sbjct: 155 -NFLFYNKQLFDDAGVPPPPGSWERPWSFAEFLDAAQALT--KQGRSGRD--------RQ 203 Query: 236 YGVKFSLSWLSYMPLVLSNGGDYLTKDGKEFGLSKPEAT----------EAIQRIADLIN 285 +G F +W+S+ G + +G + + + T EA+Q ADL N Sbjct: 204 WG--FVNAWVSFYA-----AGLFAMNNGVPWSVPRMNPTHLNFDHDGFLEAVQFYADLTN 256 Query: 286 VYHVAPSPVQASSIPAPATALQSRKVAMVIDGSWNHLDLSKAN-INWGVGVLPVLKDYKT 344 + VAPS + S+ + A K + + G W + +A+ +++ V LP+ + Sbjct: 257 KHKVAPSAAEQQSM-STADLFSVGKAGIALAGHWRYQTFDRADGLDFDVAPLPIGPRGRA 315 Query: 345 FF--LGGS-LIIFKSSKHPKEAWEFSKFLTDP-QNVLELHQGLWMPQLK 389 +G + L I +S+ +AWEF KF T P L L++P L+ Sbjct: 316 ACSDIGVTGLAIAATSRRKDQAWEFVKFATGPVGQALIGESRLFVPVLR 364 >PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 464 Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 97/363 (26%), Positives = 159/363 (43%), Gaps = 51/363 (14%) Query: 60 DKVTLKFTFWGSPQ-EKQAVEDAIKAFEAKNPNITIDSIHIPGTDFLQKLNAMIAGNEAP 118 ++V ++F W + + E + + I+ FE +NPNI + + F + + A AP Sbjct: 66 NQVFIRFAGWSAGETEMKNYQRMIELFEKENPNIKV-KYEVITQMFHENILASFGAGVAP 124 Query: 119 DLSY-SAAWKLKMGEEGLIYNFFDLMKDDPSIKKEDYLQYAWWNWDTDKSAGPYQASVVP 177 D+ Y ++W E+G +Y +L D+ I K + + P S++ Sbjct: 125 DVFYVDSSWAPIFIEKGALYPISEL-ADESFINKFYPFLLEPFKKNGKLYGLPKDWSML- 182 Query: 178 SLMYNADLFKEAGVELPPTKAEEAWQWDEFVDTAKKLTLDRNGKHPDDPGFDPKNIKQYG 237 +L YN LF++AG+ PP WDE ++ AK +T ++ GK PG + Y Sbjct: 183 ALFYNKKLFEQAGLTKPPE------TWDELLEYAKIIT-EKTGK----PG-----LAIYL 226 Query: 238 VKFSLSWLSYMPLVLSNGGD--YLTKDGKEFGLSKPEATEAIQRIADL------------ 283 F+ Y+P+ +SNG + K P E + +L Sbjct: 227 GGFN----RYVPVAVSNGAPKPWFEKPEDASWFDNPVVRETLTWYINLYRKGKVEREKKG 282 Query: 284 INVYHVAPSPVQASSIPAPATALQSRKVAMVIDGSWNHLDLS------KANINWGVGVLP 337 + Y VAP V A + A +KVAMVI G+W L+ K +W + LP Sbjct: 283 LPPYVVAPEDVGAGWL---GDAFGQQKVAMVISGNWMIPFLADQFPNFKYGEDWDIAPLP 339 Query: 338 VLKDYKTFFLGGSLI-IFKSSKHPKEAWEFSKFLTDP--QNVLELHQGLWMPQLKQWYED 394 K+ + + ++ I +KHPKEAW+F +F+ P Q L + G +P +K + D Sbjct: 340 AGKNGRVTMVYTVILGINSKTKHPKEAWKFVEFILGPRGQKELVVKAGQTLPSMKGFEND 399 Query: 395 PKL 397 P L Sbjct: 400 PDL 402 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.132 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 34,541,932 Number of extensions: 1514597 Number of successful extensions: 2470 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 2456 Number of HSP's successfully gapped: 30 Length of query: 473 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 363 Effective length of database: 25,691,691 Effective search space: 9326083833 Effective search space used: 9326083833 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)