BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0272.0003.p (151 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1843 [G] COG0395 ABC-type sugar transport system, permease co... 91 6e-19 lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 90 1e-18 all4824 [G] COG0395 ABC-type sugar transport system, permease co... 87 1e-17 ML1425 [G] COG0395 ABC-type sugar transport system, permease com... 86 3e-17 BS_yesQ [G] COG0395 ABC-type sugar transport system, permease co... 84 6e-17 >lin1843 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 78/129 (60%), Gaps = 1/129 (0%) Query: 22 FSLLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEALTILPFGRYFINTTVIVIFT 81 F +LP IW++ SSL +I ++PP P+ F NF++ T + F Y NT +IV F+ Sbjct: 25 FMILPFIWMVLSSLKTDAEILKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFS 84 Query: 82 MLGVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIP 141 G+ + +++ Y FA+ ++G+N +F L+L++MM+P VT+IP ++ + GLTN+ Sbjct: 85 FFGLFLN-AMAGYGFAKFKFKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTG 143 Query: 142 LIAPACSAA 150 ++ P A Sbjct: 144 IVLPGLVGA 152 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 75/123 (60%) Query: 24 LLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEALTILPFGRYFINTTVIVIFTML 83 L+P +W+I ++ LPP +IP NF++ + P R+ +N+ V+ + T L Sbjct: 31 LMPFVWMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLMNSVVVAVVTTL 90 Query: 84 GVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIPLI 143 G ++ CS++AY+FAR+ + GR+ +F L L++MM+P VT+IP FI + G +S+ LI Sbjct: 91 GQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLI 150 Query: 144 APA 146 PA Sbjct: 151 VPA 153 >all4824 [G] COG0395 ABC-type sugar transport system, permease component Length = 279 Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 84/129 (65%), Gaps = 1/129 (0%) Query: 23 SLLPLIWLIRSSLMD-MGQIFELPPIWIPDPFRFGNFSEALTILPFGRYFINTTVIVIFT 81 +L PL+WLI ++L IF+ PP +P+ NF + LPFG+Y N+T++ + T Sbjct: 26 TLFPLLWLISTALKSPTENIFQSPPQLLPNQPTVDNFFKVWNSLPFGQYLYNSTLVSVLT 85 Query: 82 MLGVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIP 141 + L+ CS++AY AR+S+ GR+ +F ++S++M+P+ + +IP +I +LGL N+++ Sbjct: 86 VGLNLLFCSLAAYPLARLSFPGRDWIFIAIVSTIMIPFQIVMIPLYILTVQLGLRNTYLG 145 Query: 142 LIAPACSAA 150 ++ P+ ++A Sbjct: 146 MMFPSLASA 154 >ML1425 [G] COG0395 ABC-type sugar transport system, permease component Length = 283 Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 76/129 (58%), Gaps = 2/129 (1%) Query: 23 SLLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEALTILPFGRYFINTTVIVIFTM 82 +L P++W + SL G+I E P +P ++ N++E ++PF R F NT + + Sbjct: 32 ALFPIVWALSGSLKKEGEIRE--PTLLPAHPQWSNYTEVFDLIPFWRMFFNTVLYAGYVT 89 Query: 83 LGVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIPL 142 +G + CS++ Y+FAR+ +RGR+ +F L L ++M+P VT+IP FI LG T++ + Sbjct: 90 VGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLTVTIIPQFILMRVLGWTDTPWAM 149 Query: 143 IAPACSAAA 151 I P +A Sbjct: 150 IVPGLFGSA 158 >BS_yesQ [G] COG0395 ABC-type sugar transport system, permease component Length = 296 Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 73/125 (58%), Gaps = 3/125 (2%) Query: 24 LLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEA---LTILPFGRYFINTTVIVIF 80 L P+IWL SS + IF IPDPF N++E + PF + N+ +IV Sbjct: 41 LYPVIWLFVSSFKESASIFTTSHSLIPDPFILSNYAEGWKGIAGQPFLTFIKNSAIIVGL 100 Query: 81 TMLGVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFI 140 + +G +++ ++ AY FAR+ ++G+ F ++ ++MLP+ V +IP +I ++KL NSF Sbjct: 101 STIGAVMSSAVIAYGFARIPFKGKKFWFACMMGTLMLPHEVLMIPQYIMFAKLDWLNSFK 160 Query: 141 PLIAP 145 P++ P Sbjct: 161 PIVVP 165 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.143 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 9,823,107 Number of extensions: 369548 Number of successful extensions: 1104 Number of sequences better than 1.0e-05: 78 Number of HSP's gapped: 1091 Number of HSP's successfully gapped: 78 Length of query: 151 Length of database: 38,378,431 Length adjustment: 97 Effective length of query: 54 Effective length of database: 27,191,033 Effective search space: 1468315782 Effective search space used: 1468315782 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 111 (47.4 bits)