BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0271.0018.p
         (220 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

yfbR [R] COG1896 Predicted hydrolases of HD superfamily               180   2e-45

>yfbR [R] COG1896 Predicted hydrolases of HD superfamily
          Length = 199

 Score =  180 bits (456), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/195 (46%), Positives = 131/195 (67%), Gaps = 5/195 (2%)

Query: 11  HFSAYLYRLQYIQRWSLMRSTAPENVAQHSFQVALLSHMLCSIGNVHFARSLNADRAAAM 70
           HF A+L RL+ I RW LMR+   ENV++HS QVA+++H L +I N  F  ++NA+R A +
Sbjct: 5   HFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALL 64

Query: 71  ALFHDATEVFTGDIATPVKHNNPRLLSSFRDMERIAAERLIGMIPPELSSVYAPLLQPQD 130
           A++HDA+EV TGD+ TPVK+ N ++   ++ +E+IA ++L+ M+P EL  ++APL+   D
Sbjct: 65  AMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQKLVDMVPEELRDIFAPLI---D 121

Query: 131 SPSGSEDARLLRYVKAADHLDAYLKCVWEVAAGNREFAAAKVQTAAKLRGLEMPEMEYFL 190
             + S++ + L  VK AD L AYLKC+ E+AAGN EF  AK +  A L      EM+YF+
Sbjct: 122 EHAYSDEEKSL--VKQADALCAYLKCLEELAAGNNEFLLAKTRLEATLEARRSQEMDYFM 179

Query: 191 AHMAPGFELSLDELS 205
               P F LSLDE+S
Sbjct: 180 EIFVPSFHLSLDEIS 194


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 15,900,574
Number of extensions: 618515
Number of successful extensions: 868
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 867
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 118
Effective length of database: 26,614,363
Effective search space: 3140494834
Effective search space used: 3140494834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)