BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0270.0010.p (297 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin1846 [K] COG0583 Transcriptional regulator 173 3e-43 BH2102 [K] COG0583 Transcriptional regulator 167 2e-41 BS_gltC [K] COG0583 Transcriptional regulator 159 5e-39 lin0491 [K] COG0583 Transcriptional regulator 141 1e-33 BS_alsR [K] COG0583 Transcriptional regulator 141 2e-33 >lin1846 [K] COG0583 Transcriptional regulator Length = 295 Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 164/293 (55%), Gaps = 6/293 (2%) Query: 7 LELLQLQYFLVVARLEHVTEAARSLHVTQSSLSKTIGRLEEDLGVPLFDRVGRKLRLNEY 66 +EL QL+YF+ VAR+EH+T+A+ +LHV QS++S+ I +LEE+LGVPLFDRVGR ++L Sbjct: 1 MELRQLKYFMEVARVEHMTKASENLHVAQSAVSRQITKLEEELGVPLFDRVGRNMQLTSV 60 Query: 67 GNKFLHRAERALFELEQGKQELRDLSSPEQGTLELAVT---AASALPHILREFRKKRPHV 123 G FL +A AL EL++ + + + + P +GT+ + + + LP ++ FR+K P + Sbjct: 61 GQDFLSQATIALNELQKAEALVTEYTDPTKGTVRVGLPNSLSTKVLPSVISTFREKYPEI 120 Query: 124 QFHVQMLATQEMVKLLHQGDVDVCLSSPAVE-EEDIECQVVYNDPILVAVPKGHRLAERT 182 + +E+ ++L G +D+ SP E E IE +++ + + VP H LAE Sbjct: 121 TYQFMEGTNEELTEMLVNGVLDMTFLSPVPESSEQIEALRFFDEKLKLIVPTSHHLAENF 180 Query: 183 SVSLTELKDESFIGVKRGYGTRDLADRICKSVGFEPKYVYEGDEPARLSALVEAEIGIAF 242 +VSL EL E F+ + + + GFEP+ ++ + + LV A +GI+ Sbjct: 181 TVSLKELSSEKFVLYPEDFDLYKIVTKAANKKGFEPQIAFQSRDFYTIQGLVGAGLGISI 240 Query: 243 IPSTARNSR--DQIQYLQVENHELVREIALLWHKRRYISQTALEFREVVADYF 293 +P + + + + + + EL R + ++ K+R +S + FR + +F Sbjct: 241 LPEMILDGAIFKETKSIALRDKELRRSVGIITTKKRNLSPSENLFRSFIISFF 293 >BH2102 [K] COG0583 Transcriptional regulator Length = 301 Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 89/254 (35%), Positives = 149/254 (58%), Gaps = 10/254 (3%) Query: 7 LELLQLQYFLVVARLEHVTEAARSLHVTQSSLSKTIGRLEEDLGVPLFDRVGRKLRLNEY 66 +E QL YF+ VA+ EHVTEAA +LHV QS++S+ I LE +LGV LF R GR+++L Sbjct: 1 MEFRQLTYFMEVAKREHVTEAAAALHVAQSAVSRQIFNLENELGVDLFIRDGRRVKLTPI 60 Query: 67 GNKFLHRAERALFELEQGKQELRDLSSPEQGTLELAVT---AASALPHILREFRKKRPHV 123 G FL R A+ ++ K+E+++ PE+GT+ +A AA LP ++ FRK+ P Sbjct: 61 GKMFLERITHAMNVIDDAKREVQEYLDPEKGTIRVAFPISLAAYTLPTVIYAFRKRYPEA 120 Query: 124 QFHVQMLATQEMVKLLHQGDVDVCLSSPA-VEEEDIECQVVYNDPILVAVPKGHRLAERT 182 +F ++ E++ + +GD ++ L P ++E+ I ++++ + ++ +P H LAE Sbjct: 121 KFQLKQALYHELINGVIKGDYNMALIGPVPMDEKKIARKILFTEQVVALLPLHHPLAENN 180 Query: 183 SVSLTELKDESFIGVKRGYGTRDLADRICKSVGFEPKYVYEGDEPARLSALVEAEIGIAF 242 ++ L +LKD+ F+ + G+ RD+ C +GF P +EGD+ L LV A +G+ Sbjct: 181 AIHLRDLKDDPFVLLPEGFVFRDIVINACSDLGFYPNIAFEGDDIDALKGLVSAGLGVTL 240 Query: 243 IP------STARNS 250 +P ST R++ Sbjct: 241 MPEVTLVDSTPRST 254 >BS_gltC [K] COG0583 Transcriptional regulator Length = 300 Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 167/296 (56%), Gaps = 6/296 (2%) Query: 7 LELLQLQYFLVVARLEHVTEAARSLHVTQSSLSKTIGRLEEDLGVPLFDRVGRKLRLNEY 66 +++ QL+YF+ VA EHV+EAA LHV QS++S+ I LEE+L V LF+R GR ++L Sbjct: 1 MDVRQLRYFMEVAEREHVSEAADHLHVAQSAISRQIANLEEELNVTLFEREGRNIKLTPI 60 Query: 67 GNKFLHRAERALFELEQGKQELRDLSSPEQGTLELAVT---AASALPHILREFRKKRPHV 123 G +FL + A+ ++ K+++ + P +GT+++ A+ LP ++ F+++ PHV Sbjct: 61 GKEFLIHVKTAMKAIDYAKEQIDEYLDPHRGTVKIGFPTSLASQLLPTVISAFKEEYPHV 120 Query: 124 QFHVQMLATQEMVKLLHQGDVDVCLSSPA-VEEEDIECQVVYNDPILVAVPKGHRLAERT 182 +F ++ + + +++ + D+D+ L P DI ++++ + I VP H LA++ Sbjct: 121 EFLLRQGSYKFLIEAVRNRDIDLALLGPVPTNFSDITGKILFTEKIYALVPLNHPLAKQK 180 Query: 183 SVSLTELKDESFIGVKRGYGTRDLADRICKSVGFEPKYVYEGDEPARLSALVEAEIGIAF 242 +V L +L+++ F+ G+ R++A CK GF P EG++ + LV A +G+ Sbjct: 181 TVHLIDLRNDQFVLFPEGFVLREMAIDTCKQAGFAPLVSTEGEDLDAIKGLVSAGMGVTL 240 Query: 243 IPST--ARNSRDQIQYLQVENHELVREIALLWHKRRYISQTALEFREVVADYFKPL 296 +P + A + + +E ++ R + ++ K R ++ +A +F E V +F L Sbjct: 241 LPESTFAETTPRFTVKIPIEFPQVKRTVGIIKPKNRELAPSANDFYEFVIQFFSKL 296 >lin0491 [K] COG0583 Transcriptional regulator Length = 297 Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 145/291 (49%), Gaps = 5/291 (1%) Query: 7 LELLQLQYFLVVARLEHVTEAARSLHVTQSSLSKTIGRLEEDLGVPLFDRVGRKLRLNEY 66 + L QL YF +A EH T AA L +TQ SLS +I LE +LGV LF++ GR +RL +Y Sbjct: 1 MNLRQLYYFKKLAEKEHYTIAAAELSITQPSLSHSIAELERELGVYLFEKQGRNIRLTKY 60 Query: 67 GNKFLHRAERALFELEQGKQELRDLSSPEQGTLELA---VTAASALPHILREFRKKRPH- 122 G +L E++L ELE+G++ L +L+SP G ++L A +P +++ F K H Sbjct: 61 GRFYLTYVEKSLAELEKGEKLLHELTSPSHGNIDLGFIYTMGAHTVPELVQNFTKAENHK 120 Query: 123 -VQFHVQMLATQEMVKLLHQGDVDVCLSSPAVEEEDIECQVVYNDPILVAVPKGHRLAER 181 + F AT+ ++ L D+ + S E DIE + +++ V + H LA+ Sbjct: 121 DITFSFYQGATKSIIPDLKNEKFDLAICSYVENEPDIEFLPLTKQELVIVVAENHPLAKY 180 Query: 182 TSVSLTELKDESFIGVKRGYGTRDLADRICKSVGFEPKYVYEGDEPARLSALVEAEIGIA 241 S+ L + D S+I G R L D + + +PK +E + LV + GI+ Sbjct: 181 DSIDLKDTADYSYIFFSDTSGLRPLIDSLFAEINIQPKIGCYVEEDTAMVGLVSVDYGIS 240 Query: 242 FIPSTARNSRDQIQYLQVENHELVREIALLWHKRRYISQTALEFREVVADY 292 +P + + ++ L + + R I L K YIS + F++ Y Sbjct: 241 IMPKISSLAHYNVKVLSINEPKHERFIYLASLKNHYISPASKAFKDFALRY 291 >BS_alsR [K] COG0583 Transcriptional regulator Length = 302 Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/274 (31%), Positives = 148/274 (54%), Gaps = 6/274 (2%) Query: 7 LELLQLQYFLVVARLEHVTEAARSLHVTQSSLSKTIGRLEEDLGVPLFDRVGRKLRLNEY 66 +EL LQYF+ VA H +AAR L++TQ LS+ I +LEE++GV L R R + L Sbjct: 1 MELRHLQYFIAVAEELHFGKAARRLNMTQPPLSQQIKQLEEEVGVTLLKRTKRFVELTAA 60 Query: 67 GNKFLHRAERALFELEQGKQELRDLSSPEQGTLELAVTAASA---LPHILREFRKKRPHV 123 G FL+ AL ++ QG + + + EQG L + ++ LP I+RE+RKK P V Sbjct: 61 GEIFLNHCRMALMQIGQGIELAQRTARGEQGLLVIGFVGSATYEFLPPIVREYRKKFPSV 120 Query: 124 QFHVQMLATQEMVKLLHQGDVDVCLSSPAVEEEDIECQVVYNDPILVAVPKGHRLAERTS 183 + ++ +++ + L +G++D+ + P ++ + + + P ++A+PK H L + S Sbjct: 121 KIELREISSSRQQEELLKGNIDIGILHPPLQHTALHIETAQSSPCVLALPKQHPLTSKES 180 Query: 184 VSLTELKDESFIGVKRGYGTRDLADRI--CKSVGFEPKYVYEGDEPARLSALVEAEIGIA 241 +++ +L+DE I V + D I C+ GF P V E E + LV A IG+ Sbjct: 181 ITIEDLRDEPIITVAKEAWPTLYMDFIQFCEQAGFRPNIVQEATEYQMVIGLVSAGIGMT 240 Query: 242 FIPSTARNSRD-QIQYLQVENHELVREIALLWHK 274 F+PS+A+ + + Y +++ +L E + + K Sbjct: 241 FVPSSAKKLFNLDVTYRKMDQIQLNAEWVIAYRK 274 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,527,690 Number of extensions: 813809 Number of successful extensions: 3284 Number of sequences better than 1.0e-05: 149 Number of HSP's gapped: 3210 Number of HSP's successfully gapped: 149 Length of query: 297 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 191 Effective length of database: 26,153,027 Effective search space: 4995228157 Effective search space used: 4995228157 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 115 (48.9 bits)