BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0270.0005.p (233 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L143624 [K] COG2207 AraC-type DNA-binding domain-containing prot... 96 5e-20 CC0637 [K] COG2207 AraC-type DNA-binding domain-containing proteins 89 6e-18 Rv1395 [K] COG2207 AraC-type DNA-binding domain-containing proteins 82 6e-16 MT1440 [K] COG2207 AraC-type DNA-binding domain-containing proteins 82 6e-16 Rv3736 [K] COG2207 AraC-type DNA-binding domain-containing proteins 79 6e-15 >L143624 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 324 Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 10/190 (5%) Query: 35 LLELGRRGTGLPLTARIV----EFSDDMGDVQTLEAYFGCPVRMGAPCNRLTLHRKDLDR 90 +L + R GTG + V FS + +V FG + N L+ + +DL+ Sbjct: 139 ILSILRTGTGQNIIPEKVISPYPFSSSILEV------FGISPELSKNDNLLSFNLQDLEL 192 Query: 91 PFVSYNEELLEILTPALDRSLGEQQRNRSISGMVKWIMKRSLTGGRPDIQAVAKELGISD 150 PF++ N + ++ P L+R L E + + ++ + G IQ VA++LGIS Sbjct: 193 PFLTRNNSMWRMIEPELNRQLEEIKTPSDFINSLHKEVQLLIPSGDCSIQNVARKLGISS 252 Query: 151 RTLQRRLSDENTTFKHLLTQARHEQALEYLADSSLDIKEVAFMIGYADQNSFYRAFRLWE 210 RTLQR L+ TTFK L + + AL + D +L E+++++GY++ +SF RAFR W Sbjct: 253 RTLQRNLAQAGTTFKVELQSVQKKMALHFSKDLNLTTDEISYLLGYSEVSSFTRAFRKWT 312 Query: 211 GDTPSNWRVK 220 G T + +R K Sbjct: 313 GMTLNQYRKK 322 >CC0637 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 335 Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 78/151 (51%) Query: 68 FGCPVRMGAPCNRLTLHRKDLDRPFVSYNEELLEILTPALDRSLGEQQRNRSISGMVKWI 127 F CPV +P N + L + P + +L D L E + +++ G V+ + Sbjct: 184 FQCPVTFSSPWNAMRLDPRIATWPVALQPRYVFGVLIQRADDLLRELEDQKTVRGRVEAV 243 Query: 128 MKRSLTGGRPDIQAVAKELGISDRTLQRRLSDENTTFKHLLTQARHEQALEYLADSSLDI 187 + L G +AVA+ LG S +TL R+L E T+K +L RH AL YL+ + + Sbjct: 244 LLPLLHTGEVSAEAVARALGFSRQTLFRKLKAEGVTYKQVLDALRHRMALRYLSGAKASV 303 Query: 188 KEVAFMIGYADQNSFYRAFRLWEGDTPSNWR 218 E A+++G+++ +F RAF+ W G +P + R Sbjct: 304 NETAYLVGFSEPAAFSRAFKRWTGRSPRHAR 334 >Rv1395 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 344 Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 1/146 (0%) Query: 72 VRMGAPCNRLTLHRKDLDRPFVSYNEELLEILTPALDRSLGEQQRNRSISGMVKWIMKRS 131 V G NR+ R D P + LE+ D + +R R I+ +V+ + R Sbjct: 196 VAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRD 255 Query: 132 LTGGRPDIQAVAKELGISDRTLQRRLSDENTTFKHLLTQARHEQALEYLADSSLDIKEVA 191 +G P VA EL + RTL+RRL++E T+F+ LL +AR A++ L + L +++V+ Sbjct: 256 -SGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVS 314 Query: 192 FMIGYADQNSFYRAFRLWEGDTPSNW 217 +GY + ++F AF+ W G PS + Sbjct: 315 TRLGYTEVSTFSHAFKRWYGVAPSEY 340 >MT1440 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 344 Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 1/146 (0%) Query: 72 VRMGAPCNRLTLHRKDLDRPFVSYNEELLEILTPALDRSLGEQQRNRSISGMVKWIMKRS 131 V G NR+ R D P + LE+ D + +R R I+ +V+ + R Sbjct: 196 VAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGITALVRSKLFRD 255 Query: 132 LTGGRPDIQAVAKELGISDRTLQRRLSDENTTFKHLLTQARHEQALEYLADSSLDIKEVA 191 +G P VA EL + RTL+RRL++E T+F+ LL +AR A++ L + L +++V+ Sbjct: 256 -SGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEARSTVAVDLLRNVGLTVQQVS 314 Query: 192 FMIGYADQNSFYRAFRLWEGDTPSNW 217 +GY + ++F AF+ W G PS + Sbjct: 315 TRLGYTEVSTFSHAFKRWYGVAPSEY 340 >Rv3736 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 353 Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 24/229 (10%) Query: 1 LRITE-EGESCTIALEWLCTEQPGPPMLMGITLAYLLELGRRGTGLPLTARIVEFSDDMG 59 +RIT G+ IALE+L E P M + L L + R G V D Sbjct: 111 IRITPLAGQRSFIALEFLLDEPASYPQTMELALGVALGVIRLLLGADYAPLAVHLPHDP- 169 Query: 60 DVQTLEA----YFGCPVRMGAPCNRLTLHRKDLDRPF----VSYNE--ELLEILTPALDR 109 T EA YFGC T+ DL RP V++ + L +TP Sbjct: 170 --LTPEAFYLQYFGCRPYFAERVGGFTMRTADLSRPLNRDDVAHRVVVDYLSSITP---- 223 Query: 110 SLGEQQRNRSISGMVKWIMKRSLTGGRPDIQAVAKELGISDRTLQRRLSDENTTFKHLLT 169 LGE I V+ I+++ L G + VA++ + +TLQRRL++ENTTF L+ Sbjct: 224 -LGE-----GIVESVRTIVRQLLPTGAATLNVVAEQFHLHPKTLQRRLAEENTTFVILVD 277 Query: 170 QARHEQALEYLADSSLDIKEVAFMIGYADQNSFYRAFRLWEGDTPSNWR 218 + R + A YL + + + +A +GYA+Q+ R+ + W G P+ +R Sbjct: 278 RVRKDVADRYLRTTGIGLTHLARELGYAEQSVLTRSCKRWFGTGPAAYR 326 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,720,429 Number of extensions: 756592 Number of successful extensions: 2137 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 2150 Number of HSP's successfully gapped: 23 Length of query: 233 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 130 Effective length of database: 26,499,029 Effective search space: 3444873770 Effective search space used: 3444873770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)