BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0270.0002.p (292 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2431 [KG] COG1349 Transcriptional regulators of sugar metabolism 124 1e-28 CAC0231 [KG] COG1349 Transcriptional regulators of sugar metabolism 117 3e-26 SMb21533 [KG] COG1349 Transcriptional regulators of sugar metabo... 115 1e-25 BS_fruR [KG] COG1349 Transcriptional regulators of sugar metabolism 113 3e-25 mlr5371 [KG] COG1349 Transcriptional regulators of sugar metabolism 113 4e-25 >lin2431 [KG] COG1349 Transcriptional regulators of sugar metabolism Length = 250 Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 74/213 (34%), Positives = 118/213 (55%), Gaps = 13/213 (6%) Query: 15 LILQQLEETGKVKVIPLAQQLEVSNETIRRDLDALEEQRKLKRVYGGAVKLTHFDGEPSY 74 LI++ +E+ G +K+ L + L+ S TIRRDL LEEQ ++RV+GGA + + EPS Sbjct: 9 LIMESIEKLGVIKLQELVEGLDTSESTIRRDLIELEEQGLIERVHGGAKLVISHNQEPSM 68 Query: 75 TMRRKLNQEGKQAIGREAARLLQDGDTVFMDTGTTVLEMTRWLAGKKNITIVTNXXXXXX 134 + N + K+ I A L+++ D +++D G+T LE+ LA +NIT+VTN Sbjct: 69 NEKSFKNIQSKKEIAAYCASLVEENDCIYLDAGSTTLELITHLAN-RNITVVTN------ 121 Query: 135 XXXXXXXXEQFTGKVI---LLGGEISVQQQSVSGILAHELLKQFTLDKAFLSVGGISPAQ 191 E+ + I LLGG++ V +++ G +A + +K + DKAF+ + P Sbjct: 122 ---GLTHIEELVRQNIDAYLLGGKMKVHTKAIIGAVALDNIKNYHFDKAFIGTNAMHPEH 178 Query: 192 GITDYDMNESLVSRLAAGQASEVILLADHSKIG 224 G T DM E+ V R A +A V ++ADH+K Sbjct: 179 GYTTPDMEEAFVKRAAKERADRVFVVADHTKFN 211 >CAC0231 [KG] COG1349 Transcriptional regulators of sugar metabolism Length = 254 Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 116/203 (57%), Gaps = 4/203 (1%) Query: 20 LEETGKVKVIPLAQQLEVSNETIRRDLDALEEQRKLKRVYGGAVKLTHFDGEPSYTMRRK 79 L+ G +KV L+ +VS TIRRDL +E++R LKR +GGAV + + E S+ ++ Sbjct: 14 LDREGSIKVNELSVHFDVSEATIRRDLKEMEDRRILKRTHGGAVPIDITNFEASFVDKKD 73 Query: 80 LNQEGKQAIGREAARLLQDGDTVFMDTGTTVLEMTRWLAGKKNITIVTNXXXXXXXXXXX 139 Q K AIG+ AA ++++GDT+ +D+GTT LE+ + + ++IT++TN Sbjct: 74 EGQVEKLAIGKYAANMIKNGDTIILDSGTTTLEIAKNIDA-EDITVITNSIDIASELLNR 132 Query: 140 XXXEQFTGKVILLGGEISVQQQSVSGILAHELLKQFTLDKAFLSVGGISPAQGITDYDMN 199 + ++I+ GG + +++ G L + K F +DKAF+ GI+ +GIT + Sbjct: 133 KDKKI---ELIVAGGILRPNTRAMVGNLCESVFKNFRVDKAFIGANGITSIEGITTPNFT 189 Query: 200 ESLVSRLAAGQASEVILLADHSK 222 E+ + A++VI++AD SK Sbjct: 190 EAQAKKAMINAANKVIVVADSSK 212 >SMb21533 [KG] COG1349 Transcriptional regulators of sugar metabolism Length = 261 Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/218 (34%), Positives = 114/218 (52%), Gaps = 9/218 (4%) Query: 16 ILQQLEETGKVKVIPLAQQLEVSNETIRRDLDALEEQRKLKRVYGGAVKLTHFDG-EPSY 74 IL+++ G V + LA +VS ETIRRD+ L ++ +L V+GGA T F+ EP+ Sbjct: 18 ILRRVASEGSVSIAELAAYFDVSRETIRRDMKLLADRGQLDVVHGGA---TLFEATEPAL 74 Query: 75 TMRRKLNQEGKQAIGREAARLLQDGDTVFMDTGTTVLEMTRWLAGKKNITIVTNXXXXXX 134 +R N K AIGR+AA L++DG VF+D+GTT L + L G +++T+ T Sbjct: 75 VLRSGENAAAKAAIGRKAAELVKDGMVVFLDSGTTTLAVAHALGGLRDLTVCTT-----G 129 Query: 135 XXXXXXXXEQFTGKVILLGGEISVQQQSVSGILAHELLKQFTLDKAFLSVGGISPAQGIT 194 Q +V +LGGEI +++ G+ A E + +F +D AFL GG+SP +T Sbjct: 130 LAIALHMCRQPQVRVHMLGGEIDPAEEAAVGLDALEAIGRFRVDIAFLGGGGLSPDGEVT 189 Query: 195 DYDMNESLVSRLAAGQASEVILLADHSKIGSXXXXFLP 232 D+ N + A + + D SK G +P Sbjct: 190 DFTRNGAEQRSRMIAMAGKAYFVLDSSKFGRLTPLRIP 227 >BS_fruR [KG] COG1349 Transcriptional regulators of sugar metabolism Length = 251 Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 6/210 (2%) Query: 15 LILQQLEETGKVKVIPLAQQLEVSNETIRRDLDALEEQRKLKRVYGGAVKLTHFDGEPSY 74 LI+ Q+E+ VK+ L S TIRRDL LEE+ LKRV+GGA KL+ EP Sbjct: 9 LIIDQIEKHDVVKIQELINLTNASESTIRRDLSTLEERGFLKRVHGGAAKLSDIRLEPDM 68 Query: 75 TMRRKLNQEGKQAIGREAARLLQDGDTVFMDTGTTVLEMTRWLAGKKNITIVTNXXXXXX 134 + N K I +AA LL++GD +++D GTT L M ++ K+I +VTN Sbjct: 69 LEKSSKNLHDKLKIAEKAASLLEEGDCIYLDAGTTTLHMIDFMDKTKDIVVVTNGVMHID 128 Query: 135 XXXXXXXXEQFTGKVILLGGEISVQQQSVSGILAHELLKQFTLDKAFLSVGGISPAQGIT 194 LLGG + + ++ G + + Q+ DK+FL G+ G T Sbjct: 129 ALIRKEI------SFYLLGGYVKHRTGAIIGGASLVAMDQYRFDKSFLGTNGVHTEAGFT 182 Query: 195 DYDMNESLVSRLAAGQASEVILLADHSKIG 224 D +E+L+ + A QA +LAD SK G Sbjct: 183 TPDPDEALLKQKAIKQAKHAYVLADPSKFG 212 >mlr5371 [KG] COG1349 Transcriptional regulators of sugar metabolism Length = 258 Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 6/209 (2%) Query: 16 ILQQLEETGKVKVIPLAQQLEVSNETIRRDLDALEEQRKLKRVYGGAVKLTHFDGEPSYT 75 IL+ L+E G V + LA +L VS ET+RRD+ L + +++G A+ L GE + Sbjct: 10 ILRLLQEEGTVTIASLADRLGVSLETVRRDVKPLSSDGSVLKMHG-AIGLPSMVGEAPFE 68 Query: 76 MRRKLNQEGKQAIGREAARLLQDGDTVFMDTGTTVLEMTRWLAGKKNITIVTNXXXXXXX 135 R + N + K+ I R A ++DG++V +DTGTT + R L G + +T+VTN Sbjct: 69 RRMRENADAKRIIARMVAATIRDGESVMLDTGTTTSFLARELLGHRRLTVVTNSSDIART 128 Query: 136 XXXXXXXEQFTGKVILLGGEISVQQQSVSGILAHELLKQFTLDKAFLSVGGISPAQGITD 195 KV + GGE+ + G A E + +F++ A +S G + G+ D Sbjct: 129 LATING-----NKVYMAGGELRSDSGAAFGTSAIEFVSRFSVSHAIISTGAVDAVTGVMD 183 Query: 196 YDMNESLVSRLAAGQASEVILLADHSKIG 224 YD+ E+ +R+ + +++ DH+K G Sbjct: 184 YDLEEAEFARMVLSRGQRSLVITDHTKFG 212 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,262,556 Number of extensions: 696249 Number of successful extensions: 1614 Number of sequences better than 1.0e-05: 123 Number of HSP's gapped: 1425 Number of HSP's successfully gapped: 123 Length of query: 292 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 187 Effective length of database: 26,268,361 Effective search space: 4912183507 Effective search space used: 4912183507 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 115 (48.9 bits)