BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0269.0015.p
         (91 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2110 [T] COG2972 Predicted signal transduction protein with a ...    49   1e-06

>BH2110 [T] COG2972 Predicted signal transduction protein with a C-terminal
           ATPase domain
          Length = 585

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 5   NVCGPNNRAIDWQGKDRQLYASLKQEHIIDFEKEYGSTSYLSGWRIVGTVNEKEIIKEVL 64
           N+   +N  ++W+ +     A    E  I  ++   S +YL GWR+ GT++E EI++E+ 
Sbjct: 221 NIEFSSNEEVNWRTEQLHFDALEFPEDTIFTKERMLSQNYLEGWRVAGTISENEILEELY 280

Query: 65  KSRYFILWSACVIPKVLIFPLRLL 88
           KSR FI+  A +    L+FP  L+
Sbjct: 281 KSREFIVILASI---NLLFPTLLI 301


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,829,299
Number of extensions: 243873
Number of successful extensions: 462
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 462
Number of HSP's successfully gapped: 1
Length of query: 91
Length of database: 38,378,431
Length adjustment: 61
Effective length of query: 30
Effective length of database: 31,343,057
Effective search space: 940291710
Effective search space used: 940291710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)