BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0013.p (310 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value TM0114 [G] COG1879 ABC-type sugar transport system, periplasmic ... 110 2e-24 BH3840 [G] COG1879 ABC-type sugar transport system, periplasmic ... 99 1e-20 BH3901 [G] COG1879 ABC-type sugar transport system, periplasmic ... 75 2e-13 BH3448 [G] COG1879 ABC-type sugar transport system, periplasmic ... 74 2e-13 PM1325 [G] COG1879 ABC-type sugar transport system, periplasmic ... 68 2e-11 >TM0114 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 335 Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 123/254 (48%), Gaps = 3/254 (1%) Query: 42 LTFGIIYPMVNATYEMITGKAEAVARKHNVELLVQAPDEANLEQQIRIMEMMIKRGVDGI 101 LT G+I V+ + + +A + V+ P + ++ Q++++E I GV+GI Sbjct: 32 LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGI 91 Query: 102 AIAPVDSQALTAMINKAAAQGIPVVCFESDSPASRRAAYIGADNRATGAVMGQTVERLLS 161 AIAP D A+ I KA GIPVV ++DSP S R YIG DN G G ++ LL Sbjct: 92 AIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLG 151 Query: 162 GKGMILVESGMSRMQSTRERLLGLEAYLTQHTDIDVLEIRHNDGSEERAAGQLEQMISDH 221 GKG +++ +G ++ +R+ G + + + ++I++++I +++ RA E ++ H Sbjct: 152 GKGKVVIGTGSLTAMNSLQRIQGFKDAI-KDSEIEIVDILNDEEDGARAVSLAEAALNAH 210 Query: 222 PHFSALVNLDFVSSTSSVLVWKAKGL--KRYNLALGLTPALQQAVENGQITRVISQNEQN 279 P A + + + LV K G K + TP + Q V+ G I + Q Sbjct: 211 PDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYM 270 Query: 280 WGEDIINTLLLQAK 293 G + L L K Sbjct: 271 MGYLSVTVLYLMNK 284 >BH3840 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 332 Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 122/258 (47%), Gaps = 1/258 (0%) Query: 52 NATYEMITGKAEAVARKHNVELLVQAPDEANLEQQIRIMEMMIKRGVDGIAIAPVDSQAL 111 N+ + ++ A + +V + +AP +N E+Q+++++M I VDGI + V+ + Sbjct: 57 NSYWRLVEKGAREAENQFDVLVEYKAPKRSNPEEQLKLIDMAISAKVDGIIVQAVNEEMF 116 Query: 112 TAMINKAAAQGIPVVCFESDSPASRRAAYIGADNRATGAVMGQTVERLLSGKGMILVESG 171 T +INKA GIPV+ ++D+P S R AYIG DN +G + G+ + + G + V +G Sbjct: 117 TPLINKAVDAGIPVITIDTDAPRSNRVAYIGTDNYYSGTIAGKAMLDDMEGDIHVAVITG 176 Query: 172 MSRMQSTRERLLGLEAYLTQHTDIDVLEIRHNDGSEERAAGQLEQMISDHPHFSALVNLD 231 + R+ G ++ + ++E+ ++ S A + Q++ +HPH +A Sbjct: 177 SLESSHQKLRVQGFIDMISNEPRVTLVEVEASNISRLEAELKAHQLMEEHPHINAFYGTS 236 Query: 232 FVSSTSSVLVWKAKGLKR-YNLALGLTPALQQAVENGQITRVISQNEQNWGEDIINTLLL 290 + V + GL Y +A P +E +I ++ Q G + LL Sbjct: 237 ALDGIGIVAAAEKLGLDDLYVIAFDTLPENLSLLEQEKIDAIVVQEPFEMGLKSVELLLD 296 Query: 291 QAKGLDTAQWINTDISII 308 +G + +T SII Sbjct: 297 IREGQPYSMTNHTHTSII 314 >BH3901 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 327 Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 70/278 (25%), Positives = 129/278 (46%), Gaps = 6/278 (2%) Query: 21 AADTPQKGAGESPLHADEEPPLTFGIIYPMVNATY--EMITGKAEAVARKHNVELLVQAP 78 A+D+ ++ ES A ++ + G +P N + ++ G A + NVE+ V Sbjct: 25 ASDSDEQMGTESVNKAGDDGKMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEV-VYVD 83 Query: 79 DEANLEQQIRIMEMMIKRGVDGIAIAPVDSQALTAMINKAAAQGIPVVCFESDSPASRRA 138 E + + QI +E +I +GVD I PVD A ++++A G+PVV DS R Sbjct: 84 AENDSDGQIAQVEDLIAQGVDAIMAIPVDLIATEFIVDRAQQAGVPVVLINRDS-VERED 142 Query: 139 AYIGADNRATGAVMGQTVERLLSGKGMILVESGMSRMQSTRERLLGLEAYLTQHTDIDVL 198 AY+G+D+ G + + V +L GKG I + +G + R LG + + Q+ ++V+ Sbjct: 143 AYVGSDSLQAGTIQMEEVAAVLKGKGKIAIMNGQMGHTAQINRTLGNKQVVDQYPGMEVV 202 Query: 199 EIRHNDGSEERAAGQLEQMISDHPHFSALVNLDFVSSTSSVLVWKAKGLKRYNLALGL-- 256 S E+ +E I F A+V + + +++ + G+ + G+ Sbjct: 203 IEGTGGWSREKGKELMESWIESGQTFDAVVANNDEMAIGAIMAAEEAGIVDELVFAGIDG 262 Query: 257 TPALQQAVENGQITRVISQNEQNWGEDIINTLLLQAKG 294 TP + G++T + Q+ + G+ + + AKG Sbjct: 263 TPDALDYMSKGKLTISVFQDAKGQGQTGLEQAIKLAKG 300 >BH3448 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 335 Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 93/191 (48%), Gaps = 14/191 (7%) Query: 51 VNATYEMITGKA------------EAVARKHNVELLVQAPDEANLEQQIRIMEMMIKRGV 98 +N TY MIT ++ E A+ NV + + + ++++QI ++E I + Sbjct: 41 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNP 100 Query: 99 DGIAIAPVDSQALTAMINKAAAQGIPVVCFESDSPASRRAAYIGADNRATGAVMGQTVER 158 GIAI+ +D LT INKA GIP+V F+S +P S +++G +N G + Sbjct: 101 AGIAISAIDPVELTDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAE 160 Query: 159 LLSGKGMILVESGMSRMQSTRERLLGLEAYL-TQHTDIDVLEIRHNDGSEERAAGQLEQM 217 LL G+G + V + + + +ER G + L + I+V+ + G + Q+ Sbjct: 161 LLDGEGEVAVIT-LPNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQL 219 Query: 218 ISDHPHFSALV 228 + D+P+ + + Sbjct: 220 LEDYPNLAGIF 230 >PM1325 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 314 Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 116/249 (46%), Gaps = 10/249 (4%) Query: 36 ADEEPPLTFGIIYPMVNATYEMITGKAEAVARKHNVELLVQ-APDEANLEQQIRIMEMMI 94 A E+P + ++ + N + + AE A++ N++L+VQ A E + EQ + ++E MI Sbjct: 26 AAEKPQIAL-LMKTLSNEYFITMRQGAEEKAKEVNIDLIVQVAEKEDSTEQLVGLVENMI 84 Query: 95 KRGVDGIAIAPVDSQALTAMINKAAAQGIPVVCFES--DSPASRRAA----YIGADNRAT 148 + VDGI + P DS A KA GIP++ + D A+++A Y+G DN Sbjct: 85 AKKVDGIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDEKATKKAGLKFNYVGVDNFHG 144 Query: 149 GAVMGQTVERLLSGKGMILVESGMSRMQSTRERLLGLEAYLTQHTDIDVLEIRHNDGSEE 208 G + + + + L+ G + + G+ + + +R G ++ +I V+ + + E Sbjct: 145 GYLAAKNLAQALNEMGDVAILEGIPGVDNGEQRKAGALKAFSESPNIKVVASQSANWETE 204 Query: 209 RAAGQLEQMISDHPHFSALVNLDFVSSTSSVLVWKAKGLKRYNLALGL--TPALQQAVEN 266 +A +++ HP+ + + + +V + GL L G P + V+ Sbjct: 205 QALNVTTNILTAHPNIKGIFAANDNMALGAVTAIENAGLAGKVLVSGYDGIPLAIEYVKK 264 Query: 267 GQITRVISQ 275 G++ I Q Sbjct: 265 GKMQNTIDQ 273 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.130 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,870,660 Number of extensions: 786380 Number of successful extensions: 2074 Number of sequences better than 1.0e-05: 32 Number of HSP's gapped: 2083 Number of HSP's successfully gapped: 32 Length of query: 310 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 204 Effective length of database: 26,153,027 Effective search space: 5335217508 Effective search space used: 5335217508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 116 (49.3 bits)