BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0010.p (346 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1012 [G] COG1879 ABC-type sugar transport system, periplasmic... 132 1e-30 BH3732 [G] COG1879 ABC-type sugar transport system, periplasmic ... 122 8e-28 ZrbsB [G] COG1879 ABC-type sugar transport system, periplasmic c... 111 2e-24 ECs4693 [G] COG1879 ABC-type sugar transport system, periplasmic... 111 2e-24 STM3884 [G] COG1879 ABC-type sugar transport system, periplasmic... 111 2e-24 >mll1012 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 315 Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 133/257 (51%), Gaps = 18/257 (7%) Query: 57 ITLGFSQVGAESGWRSANTKSIQDSAKE--AGYTLKFSDAQQKQENQIKALRSFIQQKVD 114 I +GFSQ WR A + + A E L +D Q+ + S I Q + Sbjct: 33 IKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDGNNDASKQVADVESLIAQGIK 92 Query: 115 VISFSPVVESGWDTVLKEAKAAGIPVVLTDRAVDSKDTSLYVTFLGSDFVEEGRKAGKWL 174 V+ SP+ E V+KEA AGI VV DR V++ T +G + + G AG++L Sbjct: 93 VLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTPVT----VHVGGENLPLGVGAGEFL 148 Query: 175 TEQYKDASEDVNIVELQGTTGSAPANDRMAGFAEVIKDNPHLKVIASQTGDFTRAKGKEV 234 ++ NI+ELQGT G++ DR GFAE I +P +KV+ASQ D+TR K + Sbjct: 149 AKKLNGKG---NIIELQGTAGASATIDRNKGFAEAIAKHPDMKVVASQNCDYTRDKAVKF 205 Query: 235 MQAFLK--ANKDIDVLYAHNDDMALGAIQAIEAAGLKPGQDIKIISVDAVKDGMQAASEG 292 M+ ++ I +YAHND+MALGAIQ +EAAG ++ ++ +D + +A +G Sbjct: 206 MEDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAGRL--NEVAVVGIDGQETAFEAVKQG 263 Query: 293 KI--NFIVECNPLLGPQ 307 K+ F+ P + P+ Sbjct: 264 KLAATFVY---PFVAPE 277 >BH3732 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 311 Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 122/223 (54%), Gaps = 11/223 (4%) Query: 82 AKEAGYTLKFSDAQQKQENQIKALRSFIQQKVDVISFSPVVESGWDTVLKEAKAAGIPVV 141 A+E G L DAQ QI + IQ+ VD+I +P + + + A AAGIPV+ Sbjct: 68 AEELGVDLITVDAQDDDAKQISDVEDLIQRGVDLILINPTDSTSVTSAIAAANAAGIPVI 127 Query: 142 LTDRAVDSKDTSLYVTFLGSDFVEEGRKAGKWLTEQYKDASEDVNIVELQGTTGSAPAND 201 DR + + V+ + SD V G AG+ L E + +E + EL+G GS+ A + Sbjct: 128 TVDRGAEGGE---VVSHIASDNVAGGEMAGELLKELVGEGAE---VAELEGIPGSSAARE 181 Query: 202 RMAGFAEVIKDNPHLKVIASQTGDFTRAKGKEVMQAFLKANKDIDVLYAHNDDMALGAIQ 261 R GF V + + L+V A QT +F RA+G VM+ L++N +I ++AHND+MALGA++ Sbjct: 182 RGEGFHNVAEGS--LEVAAKQTANFNRAEGLTVMENILQSNPEITGVFAHNDEMALGALE 239 Query: 262 AIEAAGLKPGQDIKIISVDAVKDGMQAASEGKINFIVECNPLL 304 AI+AAG DI I+ DA D + A G++ V P L Sbjct: 240 AIDAAGR---DDIVIVGFDATDDAVAAVEAGRLAGTVAQQPTL 279 >ZrbsB [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 296 Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 111/216 (51%), Gaps = 10/216 (4%) Query: 79 QDSAKEAGYTLKFSDAQQKQENQIKALRSFIQQKVDVISFSPVVESGWDTVLKEAKAAGI 138 Q A + GY L D+Q ++ ++ + ++ +P +K A A I Sbjct: 49 QKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANI 108 Query: 139 PVVLTDRAVDSKDTSLYVTFLGSDFVEEGRKAGKWLTEQYKDASEDVNIVELQGTTGSAP 198 PV+ DR + V+ + SD V G+ AG ++ K A E ++ELQG G++ Sbjct: 109 PVITLDRQATKGEV---VSHIASDNVLGGKIAGDYIA---KKAGEGAKVIELQGIAGTSA 162 Query: 199 ANDRMAGFAEVIKDNPHLKVIASQTGDFTRAKGKEVMQAFLKANKDIDVLYAHNDDMALG 258 A +R GF + + + V+ASQ DF R KG VMQ L A+ D+ ++A ND+MALG Sbjct: 163 ARERGEGFQQAVAAH-KFNVLASQPADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALG 221 Query: 259 AIQAIEAAGLKPGQDIKIISVDAVKDGMQAASEGKI 294 A++A++ AG D+ ++ D DG +A ++GK+ Sbjct: 222 ALRALQTAG---KSDVMVVGFDGTPDGEKAVNDGKL 254 >ECs4693 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 296 Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 68/216 (31%), Positives = 111/216 (51%), Gaps = 10/216 (4%) Query: 79 QDSAKEAGYTLKFSDAQQKQENQIKALRSFIQQKVDVISFSPVVESGWDTVLKEAKAAGI 138 Q A + GY L D+Q ++ ++ + ++ +P +K A A I Sbjct: 49 QKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANI 108 Query: 139 PVVLTDRAVDSKDTSLYVTFLGSDFVEEGRKAGKWLTEQYKDASEDVNIVELQGTTGSAP 198 PV+ DR + V+ + SD V G+ AG ++ K A E ++ELQG G++ Sbjct: 109 PVITLDRQATKGEV---VSHIASDNVLGGKIAGDYIA---KKAGEGAKVIELQGIAGTSA 162 Query: 199 ANDRMAGFAEVIKDNPHLKVIASQTGDFTRAKGKEVMQAFLKANKDIDVLYAHNDDMALG 258 A +R GF + + + V+ASQ DF R KG VMQ L A+ D+ ++A ND+MALG Sbjct: 163 ARERGEGFQQAVAAH-KFNVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALG 221 Query: 259 AIQAIEAAGLKPGQDIKIISVDAVKDGMQAASEGKI 294 A++A++ AG D+ ++ D DG +A ++GK+ Sbjct: 222 ALRALQTAG---KSDVMVVGFDGTPDGEKAVNDGKL 254 >STM3884 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 296 Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 110/216 (50%), Gaps = 10/216 (4%) Query: 79 QDSAKEAGYTLKFSDAQQKQENQIKALRSFIQQKVDVISFSPVVESGWDTVLKEAKAAGI 138 Q A + GY L D+Q ++ ++ + ++ +P +K A A I Sbjct: 49 QKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQAKI 108 Query: 139 PVVLTDRAVDSKDTSLYVTFLGSDFVEEGRKAGKWLTEQYKDASEDVNIVELQGTTGSAP 198 PV+ DR D V+ + SD V G+ AG ++ K A E ++ELQG G++ Sbjct: 109 PVITLDRQATKGDV---VSHIASDNVLGGKIAGDYIA---KKAGEGAKVIELQGIAGTSA 162 Query: 199 ANDRMAGFAEVIKDNPHLKVIASQTGDFTRAKGKEVMQAFLKANKDIDVLYAHNDDMALG 258 A +R GF + + + V+ASQ DF R KG VMQ L A+ D+ ++A ND+MALG Sbjct: 163 ARERGEGFQQAVAAH-KFNVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALG 221 Query: 259 AIQAIEAAGLKPGQDIKIISVDAVKDGMQAASEGKI 294 A++A++ AG D+ ++ D DG +A +GK+ Sbjct: 222 ALRALQTAG---KADVMVVGFDGTPDGEKAVKDGKL 254 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.129 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,736,992 Number of extensions: 755375 Number of successful extensions: 2049 Number of sequences better than 1.0e-05: 79 Number of HSP's gapped: 1997 Number of HSP's successfully gapped: 79 Length of query: 346 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 239 Effective length of database: 26,037,693 Effective search space: 6223008627 Effective search space used: 6223008627 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 116 (49.3 bits)