BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0269.0008.p
         (139 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type tr...    49   2e-06
ZrbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type t...    49   2e-06
STM3883 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type...    48   4e-06

>rbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type
          transport systems, permease components
          Length = 321

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 8/60 (13%)

Query: 23 SPDFFSITVHDGHLYGSLIDILNFGAPLILVAIGMTLVVATKGIDLSVGSIVAISGAIAC 82
          SP+FF+I         +L +IL   +   ++A+GMTLV+ T GIDLSVGS++A++GA+A 
Sbjct: 37 SPNFFTIN--------NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAA 88


>ZrbsC [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type
          transport systems, permease components
          Length = 321

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 8/60 (13%)

Query: 23 SPDFFSITVHDGHLYGSLIDILNFGAPLILVAIGMTLVVATKGIDLSVGSIVAISGAIAC 82
          SP+FF+I         +L +IL   +   ++A+GMTLV+ T GIDLSVGS++A++GA+A 
Sbjct: 37 SPNFFTIN--------NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAA 88



 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 8/60 (13%)

Query: 23 SPDFFSITVHDGHLYGSLIDILNFGAPLILVAIGMTLVVATKGIDLSVGSIVAISGAIAC 82
          SP+FF+I         +L +IL   +   ++A+GMTLV+ T GIDLSVGS++A++GA+A 
Sbjct: 37 SPNFFTIN--------NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAA 88


>STM3883 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type
          transport systems, permease components
          Length = 321

 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 8/60 (13%)

Query: 23 SPDFFSITVHDGHLYGSLIDILNFGAPLILVAIGMTLVVATKGIDLSVGSIVAISGAIAC 82
          SP+FF++         +L +IL   +   ++A+GMTLV+ T GIDLSVGS++A++GA+A 
Sbjct: 37 SPNFFTVN--------NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAA 88


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.322    0.141    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 7,802,467
Number of extensions: 235205
Number of successful extensions: 610
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 5
Length of query: 139
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 44
Effective length of database: 27,421,701
Effective search space: 1206554844
Effective search space used: 1206554844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)