BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0006.p (322 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ZyjfF [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type t... 216 4e-56 yjfF [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type tr... 216 4e-56 ZyjfF [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type t... 216 4e-56 PM0154 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 117 2e-26 Cgl1224 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 111 2e-24 >ZyjfF [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Length = 323 Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 172/304 (56%) Query: 11 IVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGGIDLSVGSV 70 ++TI +F++ + ++ GF S +V+ N+L DNAFL I AVGM+FVILSGGIDLSVGSV Sbjct: 1 MITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSV 60 Query: 71 IALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVTLAGMFLAR 130 IA + + A ++ G P + PLVL+MG FG MG +I I FI+TLAGMF R Sbjct: 61 IAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLR 120 Query: 131 GLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXXHYTRFGRN 190 G+ Y++S ++I I++ Y ++ +PGG LS H TRFG Sbjct: 121 GVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQ 180 Query: 191 VYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHAVGFELDTI 250 VYA+GG+ SA LMG+ T + +Y LS + LAG+VF+ Y +GY L VG ELD I Sbjct: 181 VYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAI 240 Query: 251 VAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIGXXXXXXXXXQ 310 + IQG+IQT I+F+GTLSSWWTKI IG Q Sbjct: 241 ASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQ 300 Query: 311 RVLS 314 R L+ Sbjct: 301 RGLT 304 >yjfF [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Length = 323 Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 172/304 (56%) Query: 11 IVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGGIDLSVGSV 70 ++TI +F++ + ++ GF S +V+ N+L DNAFL I AVGM+FVILSGGIDLSVGSV Sbjct: 1 MITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSV 60 Query: 71 IALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVTLAGMFLAR 130 IA + + A ++ G P + PLVL+MG FG MG +I I FI+TLAGMF R Sbjct: 61 IAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLR 120 Query: 131 GLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXXHYTRFGRN 190 G+ Y++S ++I I++ Y ++ +PGG LS H TRFG Sbjct: 121 GVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQ 180 Query: 191 VYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHAVGFELDTI 250 VYA+GG+ SA LMG+ T + +Y LS + LAG+VF+ Y +GY L VG ELD I Sbjct: 181 VYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAI 240 Query: 251 VAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIGXXXXXXXXXQ 310 + IQG+IQT I+F+GTLSSWWTKI IG Q Sbjct: 241 ASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQ 300 Query: 311 RVLS 314 R L+ Sbjct: 301 RGLT 304 Score = 216 bits (550), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 128/304 (42%), Positives = 172/304 (56%) Query: 11 IVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGGIDLSVGSV 70 ++TI +F++ + ++ GF S +V+ N+L DNAFL I AVGM+FVILSGGIDLSVGSV Sbjct: 1 MITIGVFVLGYLYCLTQFPGFASTRVICNILTDNAFLGIIAVGMTFVILSGGIDLSVGSV 60 Query: 71 IALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVTLAGMFLAR 130 IA + + A ++ G P + PLVL+MG FG MG +I I FI+TLAGMF R Sbjct: 61 IAFTGVFLAKVIGDFGLSPLLAFPLVLVMGCAFGAFMGLLIDALKIPAFIITLAGMFFLR 120 Query: 131 GLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXXHYTRFGRN 190 G+ Y++S ++I I++ Y ++ +PGG LS H TRFG Sbjct: 121 GVSYLVSEESIPINHPIYDTLSSLAWKIPGGGRLSAMGLLMLAVVVIGIFLAHRTRFGNQ 180 Query: 191 VYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHAVGFELDTI 250 VYA+GG+ SA LMG+ T + +Y LS + LAG+VF+ Y +GY L VG ELD I Sbjct: 181 VYAIGGNATSANLMGISTRSTTIRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAI 240 Query: 251 VAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIGXXXXXXXXXQ 310 + IQG+IQT I+F+GTLSSWWTKI IG Q Sbjct: 241 ASVVIGGTLLSGGVGTVLGTLFGVAIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQ 300 Query: 311 RVLS 314 R L+ Sbjct: 301 RGLT 304 >PM0154 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Length = 322 Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 123/224 (54%), Gaps = 5/224 (2%) Query: 31 FFSLQVLMNLLVDNAFLLITAVGMSFVILSGGIDLSVGSVIALSTMVSASLVQQQGWPPA 90 FFS+ ++N+L + I AVGM+FVIL GIDLSVGSV+AL+ ++AS+V + P Sbjct: 37 FFSVDNILNILRQTSVNAIIAVGMTFVILIAGIDLSVGSVLALTGAIAASMVSTE-LPIL 95 Query: 91 VVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVTLAGMFLARGLCYVISIDTITIDNTFYTA 150 +VIP+ LL+G + G + G I+ +Q FI TL M L RG+ V + D I +T ++ Sbjct: 96 LVIPVTLLIGTLLGGISGVIVAKGKVQAFIATLVTMTLLRGVTMVYT-DGRPI-STGFSE 153 Query: 151 MAQTRIPLPGGSFLSISXXXXXXXXXXXXX--XXHYTRFGRNVYALGGSEQSALLMGLPV 208 A T L G I +TR GR +YALGG+E + L G+ V Sbjct: 154 GADTFSLLGTGYVFGIPVPIWIMAFVFAASWYVLKHTRIGRYIYALGGNEAATQLSGINV 213 Query: 209 ARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHAVGFELDTIVA 252 + K+ V+ +SG SALAG++ T + S V +ELD I A Sbjct: 214 NKIKIFVFAVSGFLSALAGLIVTSRLSSAQPTAGVSYELDAIAA 257 >Cgl1224 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Length = 304 Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/272 (33%), Positives = 136/272 (50%), Gaps = 11/272 (4%) Query: 31 FFSLQVLMNLLVDNAFLLITAVGMSFVILSGGIDLSVGSVIALSTMVSASLVQQQGWPPA 90 F ++ L+N+ + +A + I A GM+FVI++ GIDLSVGSV AL M SA + G P Sbjct: 24 FLTIPNLINIGIQSATVAILAFGMTFVIVTAGIDLSVGSVAALGAMTSAYFFAEVGLPGW 83 Query: 91 VVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVTLAGMFLARGLCYVISIDTITIDNTFYTA 150 + + + L +G + G + G I Y + FI TLA M +ARG+ VIS + A Sbjct: 84 ITLLIGLFIGLLAGAISGISIAYGKLPAFIATLAMMSIARGITLVISQGSPIPSAPAVNA 143 Query: 151 MAQT--RIPLPGGSFLSISXXXXXXXXXXXXXXXHYTRFGRNVYALGGSEQSALLMGLPV 208 + +T IP+P T GR++YA+GG+ ++A L GLPV Sbjct: 144 LGRTYFGIPMP--------ILMMALAGIVCWFILSRTVLGRSMYAIGGNMEAARLSGLPV 195 Query: 209 ARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHAVGFELDTIVAXXXXXXXXXXXXXXXX 268 + V+VY L+G+ +ALAG+V T + S VG+ELD I A Sbjct: 196 KKILVMVYALAGVYAALAGLVMTGRLSSAQPQAGVGYELDAIAAVVIGGASLAGGTGKAT 255 Query: 269 XXXXXXXIQGVIQTIISFEGTLSSWWTKIVIG 300 + VI+ ++ +SS+W +IVIG Sbjct: 256 GTLIGAILLAVIRNGLNIL-NVSSFWQQIVIG 286 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.329 0.142 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,966,629 Number of extensions: 630013 Number of successful extensions: 2681 Number of sequences better than 1.0e-05: 88 Number of HSP's gapped: 2591 Number of HSP's successfully gapped: 105 Length of query: 322 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 216 Effective length of database: 26,153,027 Effective search space: 5649053832 Effective search space used: 5649053832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 116 (49.3 bits)