BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0005.p (346 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll1012 [G] COG1879 ABC-type sugar transport system, periplasmic... 139 9e-33 BH3732 [G] COG1879 ABC-type sugar transport system, periplasmic ... 103 6e-22 Cgl1225 [G] COG1879 ABC-type sugar transport system, periplasmic... 96 7e-20 BH2323 [G] COG1879 ABC-type sugar transport system, periplasmic ... 90 5e-18 BMEI0393 [G] COG1879 ABC-type sugar transport system, periplasmi... 87 5e-17 >mll1012 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 315 Score = 139 bits (349), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 89/294 (30%), Positives = 150/294 (51%), Gaps = 22/294 (7%) Query: 46 MAADKPVVLGFSQLGSESTWREANTASIREAAGEA--GITLLLKNAEQDQQKQFEXXXXI 103 +A DK + +GFSQ WR A ++ A E + L++ + D KQ + Sbjct: 28 LAQDK-IKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDGNNDASKQV---ADV 83 Query: 104 RSFIRSGVDVIAIAPVVQTGWEPILLEIKQAGIPVIILDRSVNVPDSSLYVTFIGSDFYE 163 S I G+ V+ I+P+ + P++ E AGI V+ LDR VN P +G + Sbjct: 84 ESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP----VTVHVGGENLP 139 Query: 164 EGVKAAKYVRDKMRHHSEVIRIAELQGTVGSTPSIDRGRGFRKMLAGQPNLRITLSATAD 223 GV A +++ K+ +I ELQGT G++ +IDR +GF + +A P++++ S D Sbjct: 140 LGVGAGEFLAKKLNGKGNII---ELQGTAGASATIDRNKGFAEAIAKHPDMKVVASQNCD 196 Query: 224 FTRSGGHEVMKIFLQQPKEQWPQVLYSHNDDMAIGAVEAIKEAGLVPGEDIIIVSVDGTR 283 +TR + M+ +Q+ Q +Y+HND+MA+GA++ ++ AG + ++ +V +DG Sbjct: 197 YTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQVLEAAGRL--NEVAVVGIDGQE 254 Query: 284 RAFEQMVAGSINAVVECNPLLGPLLMQAVKEVMAGR------TLPKRMVTPEDI 331 AFE + G + A P + P ++ +V G TLP VTP++I Sbjct: 255 TAFEAVKQGKLAATF-VYPFVAPEGIETAYKVAKGEEVPETITLPTVSVTPDNI 307 >BH3732 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 311 Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 83/262 (31%), Positives = 131/262 (50%), Gaps = 21/262 (8%) Query: 77 AGEAGITLLLKNAEQDQQKQFEXXXXIRSFIRSGVDVIAIAPVVQTGWEPILLEIKQAGI 136 A E G+ L+ +A+ D KQ + I+ GVD+I I P T + AGI Sbjct: 68 AEELGVDLITVDAQDDDAKQI---SDVEDLIQRGVDLILINPTDSTSVTSAIAAANAAGI 124 Query: 137 PVIILDRSVNVPDSSLYVTFIGSDFYEEGVKAAKYVRDKMRHHSEVIRIAELQGTVGSTP 196 PVI +DR + V+ I SD G A + +++ + +EV AEL+G GS+ Sbjct: 125 PVITVDRG---AEGGEVVSHIASDNVAGGEMAGELLKELVGEGAEV---AELEGIPGSSA 178 Query: 197 SIDRGRGFRKMLAGQPNLRITLSATADFTRSGGHEVMKIFLQQPKEQWPQV--LYSHNDD 254 + +RG GF + G +L + TA+F R+ G VM+ LQ P++ +++HND+ Sbjct: 179 ARERGEGFHNVAEG--SLEVAAKQTANFNRAEGLTVMENILQSN----PEITGVFAHNDE 232 Query: 255 MAIGAVEAIKEAGLVPGEDIIIVSVDGTRRAFEQMVAGSINAVVECNP-LLGPLLMQAVK 313 MA+GA+EAI AG +DI+IV D T A + AG + V P L+G + Sbjct: 233 MALGALEAIDAAGR---DDIVIVGFDATDDAVAAVEAGRLAGTVAQQPTLIGETAVATAF 289 Query: 314 EVMAGRTLPKRMVTPEDIYTRE 335 V++G + + + ++ T E Sbjct: 290 SVLSGDDVEEFIPVDLELVTNE 311 >Cgl1225 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 314 Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 18/231 (7%) Query: 74 REAAGEAGITLLLKNAEQDQQKQFEXXXXIRSFIRSGVDVIAIAPVVQTGWEPILLEIKQ 133 +E A E G+TL +++A D Q + + + +G V+ + P P + + Q Sbjct: 60 QEKADELGVTLNVQDASDDAATQ---ANQLNNAVTTGAGVVIVNPTDSDAVVPSVEALNQ 116 Query: 134 AGIPVIILDRSVNVPDSSLYVTFIGSDFYEEGVKAAKYVRDKMRHHSEVIRIAELQGTVG 193 A IPV+ +DRS N + +F+ SD G +AA + + + E++ LQG G Sbjct: 117 ADIPVVAVDRSSNGGE---VASFVASDNVAGGAQAAAALAEAIGGEGEILM---LQGIAG 170 Query: 194 STPSIDRGRGFRKMLAGQPNLRITLSATADFTRSGGHEVMKIFLQQPKEQWPQV--LYSH 251 S+ S DRG+GF + +A + I TA+F R G +V LQ P V +++ Sbjct: 171 SSASRDRGQGFEEEIAKHEGISIVAKQTANFDRGEGLDVATNLLQ----AHPNVKAIFAE 226 Query: 252 NDDMAIGAVEAIKEAGLVPGEDIIIVSVDGTRRAFEQMVAGSINAVVECNP 302 ND+MA+GA+EA+ G GED+I+V DGT + G + A V P Sbjct: 227 NDEMALGAIEAL---GARAGEDVIVVGFDGTNDGLAAVEDGRMLATVAQQP 274 >BH2323 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 323 Score = 90.1 bits (222), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 71/268 (26%), Positives = 125/268 (46%), Gaps = 18/268 (6%) Query: 74 REAAGEAGITLLLKNAEQDQQKQFEXXXXIRSFIRSGVDVIAIAPVVQTGWEPILLEIKQ 133 EAA + +A+ D +Q + +FI VD I + PV T I+ + Sbjct: 65 EEAANYPDFEFIFSDAQNDSTQQM---AQVENFISRNVDAIIVNPVDTTSAVDIVNMVND 121 Query: 134 AGIPVIILDRSVNVPDSSLYVTFIGSDFYEEGVKAAKYVRDKMRHHSEVIRIAELQGTVG 193 AGIP+II +R+ + D + F+GS+ + G+ + V + + IA + G +G Sbjct: 122 AGIPIIIANRTFDGVDQA--TAFVGSESIQSGLLQMEEVAKLLNNEG---NIAIMDGELG 176 Query: 194 STPSIDRGRGFRKMLAGQPNLRITLSATADFTRSGGHEVMKIFLQQPKEQWPQVLYSHND 253 I R G ++++ L + L TA F RS G +M+ +L E + ++ND Sbjct: 177 HEAQIMRTEGNKQIIEEHDGLEVVLQGTAKFDRSEGMRLMENWLNSGTE--IDAVVANND 234 Query: 254 DMAIGAVEAIKEAGLVPGEDIIIVSVDGTRRAFEQMVAGSINAVV------ECNPLLGPL 307 +MA+GA+ A++ G + +D+I+ +D T A E M G ++ V + + Sbjct: 235 EMALGAILALEAVGKL--DDVIVAGIDATPAALEAMKEGKLDVTVFQDAKGQGATSVKVA 292 Query: 308 LMQAVKEVMAGRTLPKRMVTPEDIYTRE 335 + A E + +P +VTPE++ E Sbjct: 293 VQAANGEDVEDAMIPYELVTPENVEEYE 320 >BMEI0393 [G] COG1879 ABC-type sugar transport system, periplasmic component Length = 325 Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 121/261 (46%), Gaps = 23/261 (8%) Query: 46 MAADKPVVLGFSQLGSES----TWREANTASIREAAGEAGITLLLKNAEQD---QQKQFE 98 +A DK + +G + G + W EA GE +T+ + D QQ+QF Sbjct: 16 LAQDKKLKIGAAPYGLNAEFMQVWSEALKKHPAVKNGEVELTIF--DGRYDALVQQEQF- 72 Query: 99 XXXXIRSFIRSGVDVIAIAPVVQTGWEPILLEIKQAGIPVIILDRSVNVPDSSLYVTFIG 158 + I D I P+ + AGIPV+ + VN S L ++G Sbjct: 73 -----NTMITQKFDAIIFVPIDIEAGATAVQAASDAGIPVVGSNTRVN---SDLLAAYVG 124 Query: 159 SDFYEEGVKAAKYVRDKMRHHSEVIRIAELQGTVGSTPSIDRGRGFRKMLAGQPNLRITL 218 SD G AK V DK+ V+ L+G +G + I R G +K LA P++++ Sbjct: 125 SDDTVSGYMEAKDVLDKIGCKGNVVI---LEGPIGQSAQISRLEGNKKALAECPDVKVLE 181 Query: 219 SATADFTRSGGHEVMKIFLQQPKEQWPQVLYSHNDDMAIGAVEAIKEAGLVPGEDIIIVS 278 TA+++R+ +M+ +L Q V+ ND+MA+GA+EAIK A L PG D I Sbjct: 182 DQTANWSRAEAQTLMENWLTAHPGQINGVI-GQNDEMALGAIEAIKAANLKPG-DFAIAG 239 Query: 279 VDGTRRAFEQMVAGSINAVVE 299 +DG A + G++ ++++ Sbjct: 240 IDGITDALHAVKEGTMTSILQ 260 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.319 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,489,040 Number of extensions: 890572 Number of successful extensions: 1905 Number of sequences better than 1.0e-05: 43 Number of HSP's gapped: 1902 Number of HSP's successfully gapped: 43 Length of query: 346 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 239 Effective length of database: 26,037,693 Effective search space: 6223008627 Effective search space used: 6223008627 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)