BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0269.0002.p
         (202 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAP0114 [G] COG3507 Beta-xylosidase                                   171   9e-43

>CAP0114 [G] COG3507 Beta-xylosidase
          Length = 531

 Score =  171 bits (432), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 100/203 (49%), Positives = 131/203 (64%), Gaps = 12/203 (5%)

Query: 1   VKKVYASDEFTAPSGGTGLAKVWQWNHNPDNSKWSLTQRQGFMRLTTGKVSTSLLDARNT 60
           +K     D+FT  S G  L++ WQWNHNPDNSKW+ ++R G+MRL T   S   L ARNT
Sbjct: 336 IKSPGTDDDFT--SQGYVLSQ-WQWNHNPDNSKWTTSERPGWMRLKT-SYSKDFLQARNT 391

Query: 61  LTQRTFGPKSTGVTALETGGMKDGDVAGLAAFQAKYGFVGVKMSGNSKSIVMVNASSGST 120
           LTQR  GP S+G   L+T  +K G ++GL+AF +KYG++GV+    +K +V  N  +GS 
Sbjct: 392 LTQRIQGPASSGWVKLDTTNIKPGQISGLSAFHSKYGYIGVRNDNGTKKLVQYNV-TGSE 450

Query: 121 TEVANVLLSQNRVYLKVVCDFTNQTDKAYFSYSLDGNNWTSLGNTLQMSYTLP-HFMGYR 179
           T +    L+ N VYLKV  D   QT K Y+SY  +GN+WT LG+TL+M +     F+GYR
Sbjct: 451 TAIN---LTNNIVYLKVSTDCNAQTAKFYYSY--NGNSWTQLGSTLKMDFFYKLWFVGYR 505

Query: 180 FALFNYATKS-AGGYADFDYLRL 201
           FALFNY T S   GYADFDY + 
Sbjct: 506 FALFNYTTGSDTSGYADFDYFKF 528


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.316    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 15,345,251
Number of extensions: 615475
Number of successful extensions: 935
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 930
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 101
Effective length of database: 26,729,697
Effective search space: 2699699397
Effective search space used: 2699699397
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)