BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0267.0017.p
         (84 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC3647 [K] COG2002 Regulators of stationary/sporulation gene ex...   121   3e-28
CAC0310 [K] COG2002 Regulators of stationary/sporulation gene ex...   119   8e-28
CAC1941 [K] COG2002 Regulators of stationary/sporulation gene ex...   113   6e-26
BS_abrB [K] COG2002 Regulators of stationary/sporulation gene ex...    96   1e-20
BH0050 [K] COG2002 Regulators of stationary/sporulation gene exp...    96   2e-20

>CAC3647 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 81

 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 68/77 (88%)

Query: 2  MKSTGIVRKVDELGRVVIPIELRRTLGIGEKDALEIYVDGERIMLKKYEPACIFCGNAEN 61
          MKSTG+VR+VDELGR+VIPIELRRTL I EKDALEIYVDGE+I+LKKY+PACIFCG+A +
Sbjct: 1  MKSTGVVRRVDELGRIVIPIELRRTLEIAEKDALEIYVDGEQIILKKYQPACIFCGDARD 60

Query: 62 VTYFKGKIVCHDCISAI 78
          V  +KGK +C  C++ +
Sbjct: 61 VINYKGKNICQSCLNQL 77


>CAC0310 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 81

 Score =  119 bits (299), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 67/77 (87%)

Query: 2  MKSTGIVRKVDELGRVVIPIELRRTLGIGEKDALEIYVDGERIMLKKYEPACIFCGNAEN 61
          MKSTG+VR+VDELGR+VIPIELRRTL I EKDALEIYVDGE+I+LKKYEPACIFCG+A +
Sbjct: 1  MKSTGVVRRVDELGRIVIPIELRRTLNIAEKDALEIYVDGEQIILKKYEPACIFCGDASD 60

Query: 62 VTYFKGKIVCHDCISAI 78
          V  ++GK +C  C+  +
Sbjct: 61 VINYRGKNICKHCLEEL 77


>CAC1941 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 79

 Score =  113 bits (283), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 62/77 (80%)

Query: 2  MKSTGIVRKVDELGRVVIPIELRRTLGIGEKDALEIYVDGERIMLKKYEPACIFCGNAEN 61
          MKSTGIVRK+D LGRVVIP ELRRT  I EKDALEIYVDGE+I+LKKY PAC+FCG A +
Sbjct: 1  MKSTGIVRKLDSLGRVVIPKELRRTFNIAEKDALEIYVDGEQIVLKKYNPACVFCGEASD 60

Query: 62 VTYFKGKIVCHDCISAI 78
          V  +KGK +C  C+  +
Sbjct: 61 VINYKGKKICKKCLKEL 77


>BS_abrB [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 96

 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 63/92 (68%), Gaps = 9/92 (9%)

Query: 2  MKSTGIVRKVDELGRVVIPIELRRTLGIGEKDALEIYVDGERIMLKKYEP--ACIFCG-- 57
          MKSTGIVRKVDELGRVVIPIELRRTLGI EKDALEIYVD E+I+LKKY+P   C   G  
Sbjct: 3  MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEV 62

Query: 58 NAENVTYFKGKIV-----CHDCISAIPTPVTN 84
          + +N+    GK+V         IS I   + N
Sbjct: 63 SDDNLKLAGGKLVLSKEGAEQIISEIQNQLQN 94


>BH0050 [K] COG2002 Regulators of stationary/sporulation gene expression
          Length = 96

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 59/75 (78%), Gaps = 4/75 (5%)

Query: 2  MKSTGIVRKVDELGRVVIPIELRRTLGIGEKDALEIYVDGERIMLKKYEP--ACIFCG-- 57
          MKSTGIVRKVDELGRVVIPIELRRTL I EKDALEIYVD +RI+LKKY+P   C   G  
Sbjct: 1  MKSTGIVRKVDELGRVVIPIELRRTLDIAEKDALEIYVDNDRIILKKYKPNMTCQVTGEV 60

Query: 58 NAENVTYFKGKIVCH 72
          + +N++  +GKI+  
Sbjct: 61 SDDNLSLAEGKIILS 75


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.323    0.142    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,299,518
Number of extensions: 244978
Number of successful extensions: 395
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 11
Length of query: 84
Length of database: 38,378,431
Length adjustment: 54
Effective length of query: 30
Effective length of database: 32,150,395
Effective search space: 964511850
Effective search space used: 964511850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)