BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0265.0024.p
         (236 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1233 [R] COG2244 Membrane protein involved in the export of O-...    87   2e-17
BS_spoVB [R] COG2244 Membrane protein involved in the export of ...    80   2e-15

>BH1233 [R] COG2244 Membrane protein involved in the export of O-antigen
           and teichoic acid
          Length = 432

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 7/123 (5%), Positives = 16/123 (13%)

Query: 30  RRDLPTIHKRMHQALRLAMVTGAPFAAVMYIFAVPLCTLMYGNADTAPMLRMMAPFALFL 89
             D+                   P           +   +                 +  
Sbjct: 310 EIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKG 369

Query: 90  YVQAPLQAALQAMERPGRALVNTXXXXXXXXXXXXXXASQPEXXXXXXXXXXXXNSILVT 149
            ++    A     E       N               A +               + L+ 
Sbjct: 370 LIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMN 429

Query: 150 MLH 152
              
Sbjct: 430 QQA 432


>BS_spoVB [R] COG2244 Membrane protein involved in the export of O-antigen
           and teichoic acid
          Length = 432

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 0/205 (0%), Positives = 0/205 (0%)

Query: 30  RRDLPTIHKRMHQALRLAMVTGAPFAAVMYIFAVPLCTLMYGNADTAPMLRMMAPFALFL 89
             D+                   P           +   +                 +  
Sbjct: 310 EIDVLRRQAAQRFGGNEKQALELPRELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKG 369

Query: 90  YVQAPLQAALQAMERPGRALVNTXXXXXXXXXXXXXXASQPEXXXXXXXXXXXXNSILVT 149
            ++    A     E       N               A +               + L+ 
Sbjct: 370 LIEEMASAYEDPKEVIEFYSKNKELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMN 429

Query: 150 MLHGYXXXXXXXXXXXXADLLKTLAAMIIMAAGMSYIYTSVPIAPAQWAQFLFAAGSGMA 209
                                                                       
Sbjct: 430                                                              489

Query: 210 LYFGICLLSGLISIRDLDRVPFIKK 234
                                    
Sbjct: 490                           514


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.331    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,737,640
Number of extensions: 300760
Number of successful extensions: 3695
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3695
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 38,378,431
Length adjustment: 103
Effective length of query: 133
Effective length of database: 26,499,029
Effective search space: 3524370857
Effective search space used: 3524370857
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 114 (48.5 bits)