BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0265.0005.p
         (78 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH2030 [R] COG2252 Permeases                                          100   6e-22
CAC2772 [R] COG2252 Permeases                                          80   5e-16
lin1959 [R] COG2252 Permeases                                          74   7e-14
RSp1678 [R] COG2252 Permeases                                          68   3e-12
lin2356 [R] COG2252 Permeases                                          66   1e-11

>BH2030 [R] COG2252 Permeases
          Length = 432

 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/76 (61%), Positives = 58/76 (76%)

Query: 1   MVQNVREMDLSDLTELFPAFLIMVMIPFTYSIVDGMAFGFITYPVVKLAMGKGKEVPPAL 60
           MVQ V+++D  D +E FPAFL++VMIPF+YSI DG+AFGFI YP+VK A+GK KEVP  L
Sbjct: 357 MVQQVKQIDFQDFSEGFPAFLVIVMIPFSYSIADGIAFGFIAYPLVKFALGKAKEVPIPL 416

Query: 61  YGIAGLFIANFVLHAF 76
           Y IA LF   FV H +
Sbjct: 417 YVIATLFFLTFVAHVY 432


>CAC2772 [R] COG2252 Permeases
          Length = 429

 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 54/73 (73%)

Query: 1   MVQNVREMDLSDLTELFPAFLIMVMIPFTYSIVDGMAFGFITYPVVKLAMGKGKEVPPAL 60
           M++ + ++D SD TE FP F+ +++I  TYSI DG+AFGF++Y V+K+  GK KE+PPAL
Sbjct: 357 MMEPITKVDFSDFTEGFPVFITLILILLTYSITDGLAFGFLSYVVIKVFGGKAKEIPPAL 416

Query: 61  YGIAGLFIANFVL 73
           Y IA LF+  F L
Sbjct: 417 YVIAILFVGMFAL 429


>lin1959 [R] COG2252 Permeases
          Length = 427

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 48/74 (64%)

Query: 1   MVQNVREMDLSDLTELFPAFLIMVMIPFTYSIVDGMAFGFITYPVVKLAMGKGKEVPPAL 60
           M+Q  +EMDLS+  E F A LI+V+IP TYSI DG+A GFI YP+++      +   P +
Sbjct: 354 MLQEFKEMDLSNPAETFSALLIIVLIPLTYSIADGIAAGFIAYPILRAFTKNEERTSPVM 413

Query: 61  YGIAGLFIANFVLH 74
           Y IA LF+  F++ 
Sbjct: 414 YVIAALFLLQFIIQ 427


>RSp1678 [R] COG2252 Permeases
          Length = 434

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 50/71 (70%)

Query: 1   MVQNVREMDLSDLTELFPAFLIMVMIPFTYSIVDGMAFGFITYPVVKLAMGKGKEVPPAL 60
           M++ + E+D +D TE  PA L  +M+PFTYSI +G+AFGF+TY  +KL  G+ +EVP  +
Sbjct: 357 MLRELVELDWADTTESVPAVLTALMMPFTYSIANGVAFGFVTYSGLKLFGGRWREVPAVV 416

Query: 61  YGIAGLFIANF 71
           + I+ +F+  F
Sbjct: 417 WIISLIFLFRF 427


>lin2356 [R] COG2252 Permeases
          Length = 430

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 3/77 (3%)

Query: 1   MVQNVREMDLSDLTELFPAFLIMVMIPFTYSIVDGMAFGFITYPVVKLAMGKGKEVPPAL 60
           M+  V+E+D   L E FPAFL+++ +P T SI  G+AFGFI+YPV+K+  GK +E+   L
Sbjct: 355 MIGAVKEIDWDTLDEAFPAFLVILAMPLTSSIAIGLAFGFISYPVLKVFTGKWRELNWFL 414

Query: 61  YGIAGLFIANFVLHAFM 77
             IA LF   F+L AF+
Sbjct: 415 IVIAVLF---FILVAFL 428


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.332    0.147    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 5,440,355
Number of extensions: 174917
Number of successful extensions: 1475
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 1476
Number of HSP's successfully gapped: 27
Length of query: 78
Length of database: 38,378,431
Length adjustment: 49
Effective length of query: 29
Effective length of database: 32,727,065
Effective search space: 949084885
Effective search space used: 949084885
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 109 (46.6 bits)