BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0061.p (571 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_oppA [E] COG4166 ABC-type oligopeptide transport system, peri... 441 e-123 CAC3634 [E] COG4166 ABC-type oligopeptide transport system, peri... 349 6e-96 STM1746 [E] COG4166 ABC-type oligopeptide transport system, peri... 337 4e-92 BS_dppE [E] COG4166 ABC-type oligopeptide transport system, peri... 329 7e-90 PM1910 [E] COG4166 ABC-type oligopeptide transport system, perip... 328 1e-89 >BS_oppA [E] COG4166 ABC-type oligopeptide transport system, periplasmic component Length = 543 Score = 441 bits (1135), Expect = e-123, Method: Compositional matrix adjust. Identities = 0/532 (0%), Positives = 0/532 (0%), Gaps = 20/532 (3%) Query: 45 GSTNTGTGDEKLAADQTLRVNLTSEPPTFDPAQAQDSQANTVLKTMYEGLTRMNDETGQA 104 + + G +R N + ++N L D A Sbjct: 25 LAADVPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDG-HPA 83 Query: 105 EPGIAEKWEVSADGLVYTFHLRDA-QWSNGDPVEAADFVRGWKIVLDPNTNPTAPYAYQL 163 A + + + + + + Q Sbjct: 84 PGVAESWDNKDAKVWTFHLRKDAKWSDGTPVTAQDFVYSWQRSVDPNTASP--YASYLQY 141 Query: 164 YYLKNAEEYYTKKVTDFSQVGVKAVDAKTLEVTLKAPTPYFLGLLSFYTYYPVHKSV-EG 222 ++ +E K + +GVKA+D TLEVTL P PYF LL + PV K+ E Sbjct: 142 GHIAGIDEILEGKKP-ITDLGVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEK 200 Query: 223 NPKWATNK-DTMITNGAFTLTEWTTGQAIQVTKNEKYWDAASIKLSKIDFSIVNSGATEL 281 + T + + + + + +A ++ I + Sbjct: 201 FGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNNAKTVINQVTYLPIASEVTDVN 260 Query: 282 LSYKNGELDRAGNPNGEIPSEQLPIVKKELPNEFVSKGIAATYYYYFNTTEKPFSNVKIR 341 + E+ + + E Y V+ Sbjct: 261 RYRSGEIDMTNNSMPIELFQKLKKEIPDE--VHVDPYLCTYYYEINNQKPPFNDVRVRTA 318 Query: 342 KALTMAINRQALIDNITLGGQLPAFGLVPPGIAGVDGEYRNTIKDSYFTE-DVEQAKTLL 400 L M + + A + + +++ + L Sbjct: 319 LKLGMDRDIIVNKVKAQGNMPAYGYTPPYTDGAKLTQP-----EWFGWSQEKRNEEAKKL 373 Query: 401 AEGLKEEGLTA---LPPVELSYNTSENHKKIALAIADMWKNSLGITVNTVNQEWAVFIDN 457 S + + ++ + Sbjct: 374 LAEAGYTADKPLTINLLYNTSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQG 433 Query: 458 RQNQNYQIARAGWTADYNDPMTFLDMFV-TGGGNNDAGYANPEYDKLIADAKASTDLAKR 516 + A + + T L + + + L +A Sbjct: 434 TFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYT 493 Query: 517 QEDFAAAEKMLIQDDMVIMPIYYYTNNSLTKEYLKGVTLDFSGAVDFTRGYL 568 + + + I Sbjct: 494 KAEQQLDKDSAI- 544 >CAC3634 [E] COG4166 ABC-type oligopeptide transport system, periplasmic component Length = 550 Score = 349 bits (896), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 206/531 (38%), Positives = 304/531 (57%), Gaps = 41/531 (7%) Query: 59 DQTLRVNLTSEPPTFDPAQAQDSQANTVLKTMYEGLTRMNDETGQAEPGIAEKWEVSADG 118 +Q + NL ++P T DP + TV++ +EGL +N + + PG+A W++SAD Sbjct: 38 EQKVSYNLGADPQTIDPGLNNSVEGGTVIENAFEGLVDIN-KNEKVVPGVASSWDISADN 96 Query: 119 LVYTFHLR-DAQWSNGDPVEAADFVRGWKIVLDPNTNPTAPYAYQLYYLKNAEEYYTKKV 177 L YTFHLR +A+WS+G PV+A DF WK L P T + YAYQLYYLKN E Y K Sbjct: 97 LTYTFHLRKNAKWSDGKPVKAKDFEFAWKRALAPET--ASDYAYQLYYLKNGEAYNNGKA 154 Query: 178 TDFSQVGVKAVDAKTLEVTLKAPTPYFLGLLSFYTYYPVHKSV--EGNPKWATNKDTMIT 235 + VGVKA+D TL+V L+APTPYFL L +F TY P+ + + + N WA K ++ Sbjct: 155 SK-DDVGVKAIDDYTLKVNLEAPTPYFLSLTAFPTYMPLREDIVSKDNKGWAAKKQNYVS 213 Query: 236 NGAFTLTEWTTGQAIQVTKNEKYWDAASIKLSKIDFSIVNSGATELLSYKNGELDRAGNP 295 NG F +T+W + +KN YW+ +IKL+ I + ++ ++ ++ +G++D Sbjct: 214 NGPFYMTDWKMKATMTFSKNPNYWNKNTIKLNSITYYMLAQESSATAAFTSGQVDI---- 269 Query: 296 NGEIPSEQLPIVKKELPNEFVSKGIAATYYYY--------------FNTTE--KPFSNVK 339 ++ +P V+K + + KG A Y YY N E K N K Sbjct: 270 -----NDLIPAVQK---SSLIQKGDAKAYPYYGTYFFDINVGDKDSANGAEITKTLKNPK 321 Query: 340 IRKALTMAINRQALIDNITLGGQLPAFGLVPPGIAGVDGE-YRNTIKDSYFTE-DVEQAK 397 +R+AL +A++R++++ N+T GG+ PA VP I +G+ ++N KD Y + DV++AK Sbjct: 322 VREALNLAVDRESIVKNVTKGGEKPATSFVPSSIKLPNGKTFKN--KDYYPAKGDVKKAK 379 Query: 398 TLLAEGLKEEGLTALPPVELSYNTSENHKKIALAIADMWKNSLGITVNTVNQEWAVFIDN 457 LLAE +G P +++ YN N++ + A+ DM+K +L I + E V +DN Sbjct: 380 QLLAEAGYPDG-KGFPSMQIMYNEGSNNQDVVQALQDMYKKNLNINFTLQSVERKVQLDN 438 Query: 458 RQNQNYQIARAGWTADYNDPMTFLDMFVTGGGNNDAGYANPEYDKLIADAKASTDLAKRQ 517 Q YQI RA W ADYNDPMTF+D+FVT GNN++GY+NPEYD LI DAK + D KR Sbjct: 439 LTKQQYQICRASWIADYNDPMTFMDLFVTDSGNNNSGYSNPEYDALIKDAKTTNDADKRI 498 Query: 518 EDFAAAEKMLIQDDMVIMPIYYYTNNSLTKEYLKGVTLDFSGAVDFTRGYL 568 +D AE ++ D+ ++PIY YTN K Y+K + G V F Y+ Sbjct: 499 DDMHKAEDAAMR-DLPVIPIYEYTNVVEVKPYVKDLHKSPLGFVYFNNTYI 548 >STM1746 [E] COG4166 ABC-type oligopeptide transport system, periplasmic component Length = 582 Score = 337 bits (863), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 200/507 (39%), Positives = 291/507 (57%), Gaps = 22/507 (4%) Query: 55 KLAADQTLRVNLTSEPPTFDPAQAQDSQANTVLKTMYEGLTRMNDETGQAEPGIAEKWEV 114 +LA QTL N SE + DP + + + V + ++EGL ++D G PG+AEKWE Sbjct: 73 QLADKQTLVRNNGSEVQSLDPHKIEGVPESNVSRDLFEGLL-ISDVEGHPSPGVAEKWE- 130 Query: 115 SADGLVYTFHLRD-AQWSNGDPVEAADFVRGWKIVLDPNTNPTAPYAYQLYY--LKNAEE 171 + D V+TFHLR+ A+WS+G PV A DFV W+ + DPNT +PYA L Y + N ++ Sbjct: 131 NKDFKVWTFHLRENAKWSDGTPVTAHDFVYSWQRLADPNT--ASPYASYLQYGHIANIDD 188 Query: 172 YYTKKVTDFSQVGVKAVDAKTLEVTLKAPTPYFLGLLSFYTYYPVHKSV--EGNPKWATN 229 K + +GVKA+D T EVTL P PYF LL + PV KS + KW T Sbjct: 189 IIAGK-KPATDLGVKALDDHTFEVTLSEPVPYFYKLLVHPSVSPVPKSAVEKFGDKW-TQ 246 Query: 230 KDTMITNGAFTLTEWTTGQAIQVTKNEKYWDAASIKLSKIDFSIVNSGATELLSYKNGEL 289 ++TNGA+ L W + I + +N +YWD A ++++ + ++S T++ Y++GE+ Sbjct: 247 PANIVTNGAYKLKNWVVNERIVLERNPQYWDNAKTVINQVTYLPISSEVTDVNRYRSGEI 306 Query: 290 DRAGNPNGEIPSEQLPIVKKELPNEFVSKGIAATYYYYFNTTEKPFSNVKIRKALTMAIN 349 D N +P E +KKE+PNE TYYY N + PF++V++R AL +A++ Sbjct: 307 DMTYN---NMPIELFQKLKKEIPNEVRVDPYLCTYYYEINNQKAPFNDVRVRTALKLALD 363 Query: 350 RQALIDNITLGGQLPAFGLVPPGIAGVDGEYRNTIKDSYFTEDVEQAKTLLAEGLKEEGL 409 R +++ + G LPA+ PP G K S + E+AK LLAE G Sbjct: 364 RDIIVNKVKNQGDLPAYSYTPPYTDGAKLVEPEWFKWSQQKRN-EEAKKLLAEA----GF 418 Query: 410 TALPPV--ELSYNTSENHKKIALAIADMWKNSLGITVNTVNQEWAVFIDNRQNQNYQIAR 467 TA P+ +L YNTS+ HKK+A+A+A +WK +LG+ VN NQEW F+D R + +AR Sbjct: 419 TADKPLTFDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLENQEWKTFLDTRHQGTFDVAR 478 Query: 468 AGWTADYNDPMTFLDMFVTGGGNNDAGYANPEYDKLIADAKASTDLAKRQEDFAAAEKML 527 AGW ADYN+P +FL+ ++ NN A Y +P +DKLIAD D +R E +A AE+ L Sbjct: 479 AGWCADYNEPTSFLNTMLSDSSNNTAHYKSPAFDKLIADTLKVADDTQRSELYAKAEQQL 538 Query: 528 IQDDMVIMPIYYYTNNSLTKEYLKGVT 554 +D I+P+YYY N L K ++ G T Sbjct: 539 DKDS-AIVPVYYYVNARLVKPWVGGYT 564 >BS_dppE [E] COG4166 ABC-type oligopeptide transport system, periplasmic component Length = 549 Score = 329 bits (844), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 192/525 (36%), Positives = 294/525 (56%), Gaps = 15/525 (2%) Query: 42 SNEGSTNTGTGDE-KLAADQTLRVNLTSEPPTFDPAQAQDSQANTVLKTMYEGLTRMNDE 100 +NE + G+ D+ K + ++ L VN +EP +FDP ++ + L + EGLTR+ + Sbjct: 31 ANEQAGKEGSHDKAKTSGEKVLYVNNENEPTSFDPPIGFNNVSWQPLNNIMEGLTRLGKD 90 Query: 101 TGQAEPGIAEKWEVSADGLVYTFHLRD-AQWSNGDPVEAADFVRGWKIVLDPNTNPTAPY 159 + EP +AEKW VS D YTF +R+ A+W+NGDPV A DF WK +LDP ++ Sbjct: 91 H-EPEPAMAEKWSVSKDNKTYTFTIRENAKWTNGDPVTAGDFEYAWKRMLDPKKGASS-- 147 Query: 160 AYQLYYLKNAEEYYTKKVTDFSQVGVKAVDAKTLEVTLKAPTPYFLGLLSFYTYYPVHKS 219 A+ Y+++ E Y + K V V A D +TLEVTL+AP YFL ++S Y+PV++ Sbjct: 148 AFLGYFIEGGEAYNSGKGKK-DDVKVTAKDDRTLEVTLEAPQKYFLSVVSNPAYFPVNEK 206 Query: 220 VE-GNPKWATNKDTMITNGAFTLTEWTTGQAIQVTKNEKYWDAASIKLSKIDFSIVNSGA 278 V+ NPKW DT + NG F LTEW +I + K++ YWD ++KL K+ +++V+ Sbjct: 207 VDKDNPKWFAESDTFVGNGPFKLTEWKHDDSITMEKSDTYWDKDTVKLDKVKWAMVSDRN 266 Query: 279 TELLSYKNGELDRAGNPNGEIPSEQLPIVKKELPNEFVSKGIAATYYYYFNTTEKPFSNV 338 T+ +++GELD A P E+ + L + ++ A Y+Y FN +PF N Sbjct: 267 TDYQMFQSGELDTAYVP-AELSDQLLDQDNVNIVDQ------AGLYFYRFNVNMEPFQNE 319 Query: 339 KIRKALTMAINRQALIDNITLGGQLPAFGLVPPGIAGVDGEYRNTIKDSYFTEDVEQAKT 398 IRKA MA++++ ++ +T + A V PG DG+ + +AK Sbjct: 320 NIRKAFAMAVDQEEIVKYVTKNNEKTAHAFVSPGFTQPDGKDFREAGGDLIKPNESKAKQ 379 Query: 399 LLAEGLKEEGLTALPPVELSYNTSENHKKIALAIADMWKNSLGITVNTVNQEWAVFIDNR 458 LL +G+KEE LP + L+Y+T HKKIA AI KNSLG+ V N EW VF++++ Sbjct: 380 LLEKGMKEENYNKLPAITLTYSTKPEHKKIAEAIQQKLKNSLGVDVKLANMEWNVFLEDQ 439 Query: 459 QNQNYQIARAGWTADYNDPMTFLDMFVTGGGNNDAGYANPEYDKLIADAKASTDLAKRQE 518 + +Q +++ + DY DP++FL+ F TG N G+AN EYD+LI AK D R Sbjct: 440 KALKFQFSQSSFLPDYADPISFLEAFQTGNSMNRTGWANKEYDQLIKQAKNEADEKTRFS 499 Query: 519 DFAAAEKMLIQDDMVIMPIYYYTNNSLTKEYLKGVTLDFSGAVDF 563 AE++LI ++ I+P+Y+Y L E +KG+ G +D Sbjct: 500 LMHQAEELLI-NEAPIIPVYFYNQVHLQNEQVKGIVRHPVGYIDL 543 >PM1910 [E] COG4166 ABC-type oligopeptide transport system, periplasmic component Length = 548 Score = 328 bits (842), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 197/514 (38%), Positives = 290/514 (56%), Gaps = 22/514 (4%) Query: 55 KLAADQTLRVNLTSEPPTFDPAQAQDSQANTVLKTMYEGLTRMNDETGQAEPGIAEKWEV 114 +LAA Q LR N+ S P + DP + + + + ++E L ++D G PG A KWE Sbjct: 36 ELAAKQELRWNIGSNPASLDPHKIEGTPEGFTSRQLFETLV-ISDAEGHIIPGAAIKWEH 94 Query: 115 SADGLVYTFHLR-DAQWSNGDPVEAADFVRGWKIVLDPNTNPTAPYAYQLYYLK--NAEE 171 S D +TFHLR DA+WSNG+PV A DFV ++ + DPNT +PY+ L YLK NAE+ Sbjct: 95 SPDFKKWTFHLRPDAKWSNGEPVTAEDFVFSFQRLADPNT--ASPYSSYLKYLKLLNAED 152 Query: 172 YYTKKVTDFSQVGVKAVDAKTLEVTLKAPTPYFLGLLSFYTYYPVHKSV--EGNPKWATN 229 K +++GVKA+DA TLE+TL A PY L Y PV+K + + KW T+ Sbjct: 153 VVAGK-KPITELGVKALDAHTLELTLSASVPYADKLTEHYVLAPVNKKLVEQFGDKW-TD 210 Query: 230 KDTMITNGAFTLTEWTTGQAIQVTKNEKYWDAASIKLSKIDFSIVNSGATELLSYKNGEL 289 ++ NGAFT+ WT + +++ N YWD A L+ + + S T++ Y+ G+L Sbjct: 211 VKNIVGNGAFTVKNWTINEKLELVPNPHYWDHAKTVLTSVTLYPIESENTDVARYRAGDL 270 Query: 290 DRAGNPNGEIPSEQLPIVKKELPNEFVSKGIAATYYYYFNTTEKPFSNVKIRKALTMAIN 349 D N +P E +K+E PNE + TY Y N + PF +V++RKAL MA++ Sbjct: 271 DIT---NHALPVELFSKLKQEYPNEVYTPASLCTYLYEINHKKPPFDDVRVRKALAMALD 327 Query: 350 RQALIDNITLGGQLPAFGLVPPGIAGVDGEYRNTIKDSYFTEDVEQAKTLLAEGLKEEGL 409 R + + +T GQ+PA+ PP I G GE + D E+ K +A LKE G Sbjct: 328 RDIITEKVTAQGQVPAYSFTPPYING--GE-KIEKPDWVALPQAERNKQAVA-LLKEAGF 383 Query: 410 TALPPVELS--YNTSENHKKIALAIADMWKNSLG--ITVNTVNQEWAVFIDNRQNQNYQI 465 P+ + YNTSENHKKIALA + +W+ +L + V N+EW ++D R NYQ+ Sbjct: 384 DKSNPLNFTLLYNTSENHKKIALAASSLWQKNLAGAVKVTLENKEWKTYLDTRHQGNYQV 443 Query: 466 ARAGWTADYNDPMTFLDMFVTGGGNNDAGYANPEYDKLIADAKASTDLAKRQEDFAAAEK 525 RAGW ADYN+ TFL+ F++ NN A Y + E+DKL+++ + A+R E +A E Sbjct: 444 TRAGWCADYNEASTFLNYFLSTSSNNTAFYKSAEFDKLLSETYLAETDAQRAEIYAKLEA 503 Query: 526 MLIQDDMVIMPIYYYTNNSLTKEYLKGVTLDFSG 559 L + D ++P+YYY + + K Y+KG ++ G Sbjct: 504 QLAK-DAALVPVYYYVDPRMVKPYVKGFPINHPG 536 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.131 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 41,557,022 Number of extensions: 1766705 Number of successful extensions: 4481 Number of sequences better than 1.0e-05: 171 Number of HSP's gapped: 3958 Number of HSP's successfully gapped: 174 Length of query: 571 Length of database: 38,378,431 Length adjustment: 112 Effective length of query: 459 Effective length of database: 25,461,023 Effective search space: 11686609557 Effective search space used: 11686609557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)