BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0059.p (315 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_oppC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 347 1e-95 BS_dppC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 330 2e-90 SA0846 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 300 3e-81 CAC3637 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 292 4e-79 CAC3643 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 285 9e-77 >BS_oppC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 302 Score = 347 bits (890), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 0/303 (0%), Positives = 0/303 (0%) Query: 13 NLKPEDFQKIGIDEKQAEVIQRESLSAWRDSWQRLRQNKMAMTALIVLGLIVLASLIGPL 72 K EK + A R + +++ ++LA ++ Sbjct: 3 LSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLIVLVLIALFVILAPMLSQF 62 Query: 73 FSKYNYYSNDLLSTNKPPSSDHWFGTDDLGRDIFVRTWYGARISLIVGLAAAAIDLFIGV 132 ++ + + + + V + + V A A+ + Sbjct: 63 AYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGRISLMVGVAAALVAVVVGTLY 122 Query: 133 IYGGIMGFFGGRVDNVMNKISEILYSIPYXXXXXXXXXXMEPSLGTIILALTITGWITMS 192 + + + L + + + + Sbjct: 123 GSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARI 182 Query: 193 WIVRGEIMQLKNREFVLASRSMGAGSKRLLFRHLLPNAVGPIIVTITLSVPNAIFAEAFL 252 + ++ K + + V + ++ + + Sbjct: 183 VRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNVLGVVVVYASLLVPSMILFESFLSF 242 Query: 253 SFLGLGVQAPIASLGSMINDSLTGWLYYPWRFLFPAILISLTMLSFNIFGDGLRDALDPK 312 LG + + F ++++L +F G + Sbjct: 243 LGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPAGFLVVTLFCFNFIGDGLRDALDPKDR 302 Query: 313 LKK 315 Sbjct: 303 305 >BS_dppC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 320 Score = 330 bits (845), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 159/291 (54%), Positives = 216/291 (74%), Gaps = 1/291 (0%) Query: 26 EKQAEVIQRESLSAWRDSWQRLRQNKMAMTALIVLGLIVLASLIGPLFSKYNYYSNDLLS 85 ++A+ ++R SLS +D+W+RL++NK+AM L +L + + ++IGP S ++ L Sbjct: 30 NREADSVKRPSLSYTQDAWRRLKKNKLAMAGLFILLFLFVMAVIGPFLSPHSVVRQSLTE 89 Query: 86 TNKPPSSDHWFGTDDLGRDIFVRTWYGARISLIVGLAAAAIDLFIGVIYGGIMGFFGGRV 145 N PPS+DHWFGTD+LGRD+F RTWYGARISL VG+ AA ID IGVIYGG+ G+ GGR+ Sbjct: 90 QNLPPSADHWFGTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVAGYKGGRI 149 Query: 146 DNVMNKISEILYSIPYXXXXXXXXXXMEPSLGTIILALTITGWITMSWIVRGEIMQLKNR 205 D++M +I E+LY +PY M P LGTII+ALT+TGW+ M+ IVRG+++Q+KN Sbjct: 150 DSIMMRIIEVLYGLPYLLVVILLMVLMGPGLGTIIVALTVTGWVGMARIVRGQVLQIKNY 209 Query: 206 EFVLASRSMGAGSKRLLFRHLLPNAVGPIIVTITLSVPNAIFAEAFLSFLGLGVQAPIAS 265 E+VLAS++ GA + R++ ++LLPN +G IIV +TL+VP AIFAE+FLSFLGLG+QAP AS Sbjct: 210 EYVLASKTFGAKTFRIIRKNLLPNTMGAIIVQMTLTVPAAIFAESFLSFLGLGIQAPFAS 269 Query: 266 LGSMINDSLTGWLY-YPWRFLFPAILISLTMLSFNIFGDGLRDALDPKLKK 315 G M ND L L + WR FPA ISLTM +FN+ GDGL+DALDPKL++ Sbjct: 270 WGVMANDGLPTILSGHWWRLFFPAFFISLTMYAFNVLGDGLQDALDPKLRR 320 >SA0846 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 356 Score = 300 bits (767), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 152/343 (44%), Positives = 219/343 (63%), Gaps = 43/343 (12%) Query: 2 ASDKNIGSLDVNLKPEDFQKIGIDEKQAEVIQRESLSAWRDSWQRLRQNKMAMTALIVLG 61 +SD I LD+N +PE +QRES + W+D+W +L++NK+A+ +I L Sbjct: 28 SSDFIIRELDLNQEPE--------------MQRESKNFWQDAWAQLKRNKLAVVGMIGLI 73 Query: 62 LIVLASLIGPLFSKYNYYSNDLLSTNKP-----------------------------PSS 92 +IV+ + IGP+ +K++Y ++ N P Sbjct: 74 IIVIFAFIGPVINKHDYAEQNVEHRNLPAKIPVLDKVPFLPFDGKDADGKDAYKAANAKE 133 Query: 93 DHWFGTDDLGRDIFVRTWYGARISLIVGLAAAAIDLFIGVIYGGIMGFFGGRVDNVMNKI 152 ++WFGTD LGRD++ RTW GA+ISL +G+ AA +D+FIGV+YG I GFFGGRVD +M +I Sbjct: 134 NYWFGTDQLGRDLWTRTWKGAQISLFIGVVAAMLDIFIGVVYGAISGFFGGRVDTIMQRI 193 Query: 153 SEILYSIPYXXXXXXXXXXMEPSLGTIILALTITGWITMSWIVRGEIMQLKNREFVLASR 212 E++ SIP EPS+ TIILA++ITGW+ MS +VRGE ++LKN+EFV+AS+ Sbjct: 194 LEVIASIPNLIVVILFVLIFEPSIWTIILAMSITGWLGMSRVVRGEFLKLKNQEFVMASK 253 Query: 213 SMGAGSKRLLFRHLLPNAVGPIIVTITLSVPNAIFAEAFLSFLGLGVQAPIASLGSMIND 272 ++GA +L+F+H+LPN +G I+VT +VP+AIF EAFLSF+G+GV AP SLGS++ND Sbjct: 254 TLGASKFKLIFKHILPNTLGAIVVTSMFTVPSAIFFEAFLSFIGIGVPAPQTSLGSLVND 313 Query: 273 SLTGWLYYPWRFLFPAILISLTMLSFNIFGDGLRDALDPKLKK 315 L YP PA+++SL +L F +F DGLRDA DPK++K Sbjct: 314 GRAMLLIYPHELFIPAMILSLLILFFYLFSDGLRDAFDPKMRK 356 >CAC3637 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 305 Score = 292 bits (748), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 145/297 (48%), Positives = 208/297 (70%) Query: 19 FQKIGIDEKQAEVIQRESLSAWRDSWQRLRQNKMAMTALIVLGLIVLASLIGPLFSKYNY 78 F+ + D K+ R S + W+D W+R + NK+A+ L+++ + L S++GPLFSK+NY Sbjct: 9 FKTVSEDRKKTHEKARPSFTYWQDVWRRFKSNKLAIVGLVIIIAVTLFSVVGPLFSKFNY 68 Query: 79 YSNDLLSTNKPPSSDHWFGTDDLGRDIFVRTWYGARISLIVGLAAAAIDLFIGVIYGGIM 138 Y+ND S N P+S H FGTD+LGRDI R YG RISL + L A+ I IG+IYGGI Sbjct: 69 YTNDYASANLSPNSIHLFGTDNLGRDILTRVMYGGRISLTIALVASVISFVIGIIYGGIS 128 Query: 139 GFFGGRVDNVMNKISEILYSIPYXXXXXXXXXXMEPSLGTIILALTITGWITMSWIVRGE 198 G+FGG VDN+M +I E + S+P + + ++I+A+ +T W+ M+ IVRG+ Sbjct: 129 GYFGGTVDNIMMRIVEGVSSLPLMIYVILIMVIVGQGMTSLIIAIALTYWVDMARIVRGQ 188 Query: 199 IMQLKNREFVLASRSMGAGSKRLLFRHLLPNAVGPIIVTITLSVPNAIFAEAFLSFLGLG 258 I+QLK EFVLA++++GA SKR+L +HLLPN +GPIIV +TL++PNAIF EAFLSF+GLG Sbjct: 189 ILQLKQEEFVLAAKTLGASSKRILIKHLLPNTMGPIIVNLTLNIPNAIFTEAFLSFVGLG 248 Query: 259 VQAPIASLGSMINDSLTGWLYYPWRFLFPAILISLTMLSFNIFGDGLRDALDPKLKK 315 V AP AS G++ +++L + +P++ LFPA+ + +TM FN GDGL ALDPK++K Sbjct: 249 VPAPQASWGTLCSNALGSYQLFPYQLLFPALALCITMFGFNFLGDGLSTALDPKMRK 305 >CAC3643 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 308 Score = 285 bits (728), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 143/303 (47%), Positives = 207/303 (68%) Query: 13 NLKPEDFQKIGIDEKQAEVIQRESLSAWRDSWQRLRQNKMAMTALIVLGLIVLASLIGPL 72 N+ + F+ + D K+ R S + W+D W+R R NK+AM L ++ + L S++GPL Sbjct: 6 NINKDLFKPVSEDRKKTHEKARPSFTYWQDVWRRFRSNKLAMIGLAIIVAVTLFSVVGPL 65 Query: 73 FSKYNYYSNDLLSTNKPPSSDHWFGTDDLGRDIFVRTWYGARISLIVGLAAAAIDLFIGV 132 SK+NYY+ND S N P+ H FGTD+LGRDI R YG RISL + L A+ I IG+ Sbjct: 66 LSKFNYYTNDYASANLSPNLTHPFGTDNLGRDILTRIMYGGRISLTIALVASVISFVIGI 125 Query: 133 IYGGIMGFFGGRVDNVMNKISEILYSIPYXXXXXXXXXXMEPSLGTIILALTITGWITMS 192 IYGGI G+FGG VDN+M +I E + S+P + + ++I+A+ +T W+ M+ Sbjct: 126 IYGGISGYFGGAVDNIMMRIVEGVSSLPLMIYVILIMVIVGQGMTSLIIAIALTYWVDMA 185 Query: 193 WIVRGEIMQLKNREFVLASRSMGAGSKRLLFRHLLPNAVGPIIVTITLSVPNAIFAEAFL 252 IVRG+I+QLK EFVLA++++GA S R+L +HL+PN +GPIIV +TL++P+AIF EAFL Sbjct: 186 RIVRGQILQLKQEEFVLAAKTLGASSTRILVKHLIPNTMGPIIVNLTLNIPSAIFTEAFL 245 Query: 253 SFLGLGVQAPIASLGSMINDSLTGWLYYPWRFLFPAILISLTMLSFNIFGDGLRDALDPK 312 SF+GLGV AP AS G++ +++L + +P++ LFPA+ + +TM FN GDGL ALDPK Sbjct: 246 SFVGLGVPAPKASWGTLCSNALGSYQLFPYQLLFPALALCITMFGFNFLGDGLSTALDPK 305 Query: 313 LKK 315 ++K Sbjct: 306 MRK 308 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,712,929 Number of extensions: 925444 Number of successful extensions: 4295 Number of sequences better than 1.0e-05: 184 Number of HSP's gapped: 4045 Number of HSP's successfully gapped: 187 Length of query: 315 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 209 Effective length of database: 26,153,027 Effective search space: 5465982643 Effective search space used: 5465982643 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 116 (49.3 bits)