BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0058.p (331 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_oppD [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 424 e-118 CAC3629 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 401 e-112 CAC3642 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 398 e-111 BS_dppD [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 396 e-110 CAC3636 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel tran... 390 e-108 >BS_oppD [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 337 Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust. Identities = 18/326 (5%), Positives = 58/326 (17%) Query: 4 ILQVKDLHVSFFVKGGEVQAVRGMNFEVGKGETVAIVGESGSGKSVTAQSIMRLIPSPPS 63 + + + V + + +G+++ S + Sbjct: 7 ATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTA 66 Query: 64 KVKKGEIIFQGQNLLDKSMKQMESIRGKDIGMIFQDPMTSLNPTIKVGKQITEVLIKHQK 123 G + G+ + E + + + + + ++ Sbjct: 67 FALMGLLAANGRIGGSATFNGREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQ 126 Query: 124 MSAAEAKERGVEMLKLVGIKNAEARFNQYPHEFSGGMRQRVMIAIALACRPALLIADEPT 183 + + + + + P + + R + +A Sbjct: 127 LMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCR 186 Query: 184 TALDVTIQAQIMEVMQDMQQKLGTSIILITHDLGVVAGMCDRVIVMYAGEVVETGTRWEI 243 L + + + Q + L + + ++V+ Sbjct: 187 PKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGR 246 Query: 244 FKNPQHPYTKGLLRSMPRLDQKKGEPLIPIIGTPPDLIKPPVGCPFTARCSEAMHVCEQI 303 + P L P Sbjct: 247 TMEYGNARDVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCP 306 Query: 304 DPGATEFSETHMARCWNLHSMAKEVQ 329 S + A Sbjct: 307 HAMEICSSAPPLEEFTPGRLRACFKP 332 >CAC3629 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 339 Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust. Identities = 194/330 (58%), Positives = 249/330 (75%), Gaps = 1/330 (0%) Query: 1 MEPILQVKDLHVSFFVKGGEVQAVRGMNFEVGKGETVAIVGESGSGKSVTAQSIMRLIPS 60 ME +L+VK+L VS+ GEVQ+VRG++F + K ET+AIVGESG GKSVT++SIMRLI Sbjct: 1 MEKVLEVKNLKVSYHTYAGEVQSVRGVSFHLNKSETLAIVGESGCGKSVTSKSIMRLIDC 60 Query: 61 PPSKVKKG-EIIFQGQNLLDKSMKQMESIRGKDIGMIFQDPMTSLNPTIKVGKQITEVLI 119 PP ++K+G EI+F +++L K++ +RG DI MIFQDPMTSLNPT+KVGKQI E ++ Sbjct: 61 PPGEIKEGSEILFGDKDILKMDDKELSKLRGGDISMIFQDPMTSLNPTMKVGKQIAESIM 120 Query: 120 KHQKMSAAEAKERGVEMLKLVGIKNAEARFNQYPHEFSGGMRQRVMIAIALACRPALLIA 179 H+ + EA + ++ML+ V I NA+ R NQYPH+FSGGMRQR MIAIALAC P +LIA Sbjct: 121 IHKGLKEKEAFKEAIKMLEAVNIPNADKRANQYPHQFSGGMRQRAMIAIALACTPKILIA 180 Query: 180 DEPTTALDVTIQAQIMEVMQDMQQKLGTSIILITHDLGVVAGMCDRVIVMYAGEVVETGT 239 DEPTTALDVTIQAQIM++M ++Q+KLGT+IILITHDLGVVA + R+ VMY+G +VE GT Sbjct: 181 DEPTTALDVTIQAQIMDLMHELQEKLGTAIILITHDLGVVASVAHRIQVMYSGIIVERGT 240 Query: 240 RWEIFKNPQHPYTKGLLRSMPRLDQKKGEPLIPIIGTPPDLIKPPVGCPFTARCSEAMHV 299 +IF+NPQHPYT LL+S+PRLD L + GTPPDL+KPP GCPF ARC M + Sbjct: 241 TDDIFENPQHPYTWALLQSVPRLDTANKGELYSLNGTPPDLLKPPAGCPFAARCKYCMGI 300 Query: 300 CEQIDPGATEFSETHMARCWNLHSMAKEVQ 329 C++ P T+ SETH CW S A +V+ Sbjct: 301 CKEQMPEETKLSETHSVSCWLKDSRAPKVE 330 >CAC3642 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 340 Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust. Identities = 194/329 (58%), Positives = 244/329 (74%), Gaps = 1/329 (0%) Query: 1 MEPILQVKDLHVSFFVKGGEVQAVRGMNFEVGKGETVAIVGESGSGKSVTAQSIMRLIPS 60 ME +L++K+L+ SFF GEV++VRG++FE+ KGE + IVGESGSGKSVT S+M L+ Sbjct: 1 MEKLLEIKNLNTSFFTHLGEVKSVRGISFELNKGEALGIVGESGSGKSVTMMSVMGLL-Q 59 Query: 61 PPSKVKKGEIIFQGQNLLDKSMKQMESIRGKDIGMIFQDPMTSLNPTIKVGKQITEVLIK 120 K+ GEIIF G +L+ S K+ME IRG +GMIFQDPMTSLNP + VG+Q+TE + K Sbjct: 60 ENGKIIDGEIIFNGVDLVKASEKEMEKIRGNKMGMIFQDPMTSLNPVLTVGEQLTEGIKK 119 Query: 121 HQKMSAAEAKERGVEMLKLVGIKNAEARFNQYPHEFSGGMRQRVMIAIALACRPALLIAD 180 H KMS+AEA + VEMLKLVGI + E R QYPHEFSGGMRQRVMIA+A+ACRP LLIAD Sbjct: 120 HLKMSSAEANKHAVEMLKLVGIPSPEKRMKQYPHEFSGGMRQRVMIAMAIACRPELLIAD 179 Query: 181 EPTTALDVTIQAQIMEVMQDMQQKLGTSIILITHDLGVVAGMCDRVIVMYAGEVVETGTR 240 EPTTALDVTIQAQI+E+M++++ K+ TSIILITHDLGVVA +C ++ VMY G ++E G Sbjct: 180 EPTTALDVTIQAQILELMKNLKDKMNTSIILITHDLGVVANLCTKINVMYGGTIIEKGNA 239 Query: 241 WEIFKNPQHPYTKGLLRSMPRLDQKKGEPLIPIIGTPPDLIKPPVGCPFTARCSEAMHVC 300 EIF NP+HPYT GLL+S+P + E L+PI G PPDL+ PP GCPF ARC M +C Sbjct: 240 REIFYNPKHPYTWGLLKSIPDPTKDSKEKLVPIDGYPPDLLNPPKGCPFAARCPYTMEIC 299 Query: 301 EQIDPGATEFSETHMARCWNLHSMAKEVQ 329 + A + E H A CW H A +V+ Sbjct: 300 MEKSAPAFKIGEDHEAACWLNHPDAPKVK 328 >BS_dppD [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 335 Score = 396 bits (1018), Expect = e-110, Method: Compositional matrix adjust. Identities = 192/319 (60%), Positives = 239/319 (74%), Gaps = 1/319 (0%) Query: 1 MEPILQVKDLHVSFFVKGGEVQAVRGMNFEVGKGETVAIVGESGSGKSVTAQSIMRLIPS 60 ME +L V++LHVSF GG VQAVRG++F++ KGET AIVGESG GKSVT+QSIM L+P Sbjct: 1 MEKVLSVQNLHVSFTTYGGTVQAVRGVSFDLYKGETFAIVGESGCGKSVTSQSIMGLLPP 60 Query: 61 PPSKVKKGEIIFQGQNLLDKSMKQMESIRGKDIGMIFQDPMTSLNPTIKVGKQITEVLIK 120 +KV G I+F+ ++L S K+M IRG DI MIFQDPMT+LNPT+ VG Q+ E L++ Sbjct: 61 YSAKVTDGRILFKNKDLCRLSDKEMRGIRGADISMIFQDPMTALNPTLTVGDQLGEALLR 120 Query: 121 HQKMSAAEAKERGVEMLKLVGIKNAEARFNQYPHEFSGGMRQRVMIAIALACRPALLIAD 180 H+KMS A++ + ML LVGI + R QYPH+FSGGMRQR++IA+AL C P +LIAD Sbjct: 121 HKKMSKKAARKEVLSMLSLVGIPDPGERLKQYPHQFSGGMRQRIVIAMALICEPDILIAD 180 Query: 181 EPTTALDVTIQAQIMEVMQDMQQKLGTSIILITHDLGVVAGMCDRVIVMYAGEVVETGTR 240 EPTTALDVTIQAQI+E+ +++Q+K S+ILITHDLGVVA + DRV VMYAG++ E GTR Sbjct: 181 EPTTALDVTIQAQILELFKEIQRKTDVSVILITHDLGVVAQVADRVAVMYAGKMAEIGTR 240 Query: 241 WEIFKNPQHPYTKGLLRSMPRLDQKKGEPLIPIIGTPPDLIKPPVGCPFTARCSEAMHVC 300 +IF PQHPYTKGLL S+PRLD E L PI GTPPDL PP GCPF ARC M VC Sbjct: 241 KDIFYQPQHPYTKGLLGSVPRLDLNGAE-LTPIDGTPPDLFSPPPGCPFAARCPNRMVVC 299 Query: 301 EQIDPGATEFSETHMARCW 319 +++ PG T S++H CW Sbjct: 300 DRVYPGQTIRSDSHTVNCW 318 >CAC3636 [EP] COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 340 Score = 390 bits (1002), Expect = e-108, Method: Compositional matrix adjust. Identities = 189/329 (57%), Positives = 240/329 (72%), Gaps = 1/329 (0%) Query: 1 MEPILQVKDLHVSFFVKGGEVQAVRGMNFEVGKGETVAIVGESGSGKSVTAQSIMRLIPS 60 ME +L++K+L+ SFF GEV++VRG++FE+ KGE + IVGESGSGKSVT S+M L+ Sbjct: 1 MEKLLEIKNLNTSFFTHLGEVKSVRGISFELNKGEALGIVGESGSGKSVTMMSVMGLL-Q 59 Query: 61 PPSKVKKGEIIFQGQNLLDKSMKQMESIRGKDIGMIFQDPMTSLNPTIKVGKQITEVLIK 120 K+ +GEIIF G N+ K+ME IRG IGMIFQDPMTSLNP + +G QI E + K Sbjct: 60 ENGKIVEGEIIFNGMNITHAPEKEMEKIRGNKIGMIFQDPMTSLNPVLTIGNQIAEGIKK 119 Query: 121 HQKMSAAEAKERGVEMLKLVGIKNAEARFNQYPHEFSGGMRQRVMIAIALACRPALLIAD 180 H M+ +EA +R +EMLKLVGI + E R QYPHEFSGGMRQRVMIA+A+AC+P LLIAD Sbjct: 120 HLNMNTSEAIKRAIEMLKLVGIPSPEKRMKQYPHEFSGGMRQRVMIAMAIACKPELLIAD 179 Query: 181 EPTTALDVTIQAQIMEVMQDMQQKLGTSIILITHDLGVVAGMCDRVIVMYAGEVVETGTR 240 EPTTALDVTIQAQI+E+M+ +++K+ TSIILITHDLGVVA +C ++ VMY G +VE G Sbjct: 180 EPTTALDVTIQAQILELMKKLKEKMNTSIILITHDLGVVANLCSKINVMYGGLIVEKGDA 239 Query: 241 WEIFKNPQHPYTKGLLRSMPRLDQKKGEPLIPIIGTPPDLIKPPVGCPFTARCSEAMHVC 300 EIF NP+HPYT GLL+S+P + E L+PI G PPDL+ PP GCPF ARC M +C Sbjct: 240 REIFYNPKHPYTLGLLKSIPDPTKDSKEKLVPIDGYPPDLLNPPKGCPFAARCPYTMEIC 299 Query: 301 EQIDPGATEFSETHMARCWNLHSMAKEVQ 329 ++ + + E H A CW H A +V Sbjct: 300 MEMPVPSFKIGENHEAACWLNHPDAPKVN 328 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,559,989 Number of extensions: 967109 Number of successful extensions: 10926 Number of sequences better than 1.0e-05: 2027 Number of HSP's gapped: 8012 Number of HSP's successfully gapped: 2205 Length of query: 331 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 224 Effective length of database: 26,037,693 Effective search space: 5832443232 Effective search space used: 5832443232 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 116 (49.3 bits)