BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0057.p (306 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3628 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 400 e-111 CAC3641 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 375 e-104 CAC3635 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 374 e-103 BS_oppF [E] COG4608 ABC-type oligopeptide transport system, ATPa... 372 e-103 BS_ykfD [E] COG4608 ABC-type oligopeptide transport system, ATPa... 368 e-102 >CAC3628 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 322 Score = 400 bits (1028), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/313 (62%), Positives = 237/313 (75%), Gaps = 13/313 (4%) Query: 2 SKNLIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLYE 61 S LIEV+ LKKYFNVG +LKAVD+++FTI++GETLG+VGESGCGKTT GRTVL LY+ Sbjct: 7 SDVLIEVKNLKKYFNVGHNAILKAVDDVSFTIKKGETLGLVGESGCGKTTCGRTVLGLYQ 66 Query: 62 PTAGSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMAG 121 T G V Y+G +I+ L K + QMIFQDPYA LNPR TV DII E +D+HG+ Sbjct: 67 ATEGEVNYDGVNIHSLRGKAKKEFSKKAQMIFQDPYACLNPRMTVGDIIAEGIDVHGLYK 126 Query: 122 SRAERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPISAL 181 ER K+I E+LD VGLN +HA+R+PHEFSGGQRQRIGIAR+LA+NP+FIVCDEPISAL Sbjct: 127 GE-ERTKKIYEMLDHVGLNREHASRFPHEFSGGQRQRIGIARALAINPEFIVCDEPISAL 185 Query: 182 DVSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELYAN 241 DVSIQAQ+VNLL +LQ +GLTYLFIAHDLSMVKHISDRV VMYLG MVE A S +LY N Sbjct: 186 DVSIQAQIVNLLIKLQREMGLTYLFIAHDLSMVKHISDRVGVMYLGTMVEFAASHDLYEN 245 Query: 242 PIHPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPI-------YAAGEKTNDSDY---- 290 P+HPYTK+L+SAIP+PDP+VE ++RI L E+ SPI +A K D Sbjct: 246 PLHPYTKALMSAIPIPDPKVEKTRQRIKLEGEVPSPINPKPGCRFAGRCKQAKPDCFEKK 305 Query: 291 -QLVEVSKGHFVA 302 + E+ KGHFV+ Sbjct: 306 PEFKEIEKGHFVS 318 >CAC3641 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 326 Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust. Identities = 195/282 (69%), Positives = 231/282 (81%), Gaps = 7/282 (2%) Query: 3 KNLIEVEGLKKYFNVGKG----KV--LKAVDNINFTIREGETLGMVGESGCGKTTAGRTV 56 K L+EV+ LKK+F V KG KV +KAVD+++FTI +GETLG+VGESGCGKTT GRTV Sbjct: 5 KVLLEVKNLKKWFPVKKGFFGGKVSNVKAVDDVSFTINKGETLGLVGESGCGKTTTGRTV 64 Query: 57 LRLYEPTAGSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDI 116 L+LYEPT+G + Y+G DI KLS +M RR MQMIFQDPYASLN R TV DIIGE++DI Sbjct: 65 LKLYEPTSGQIIYDGKDIAKLSYKEMLPYRRKMQMIFQDPYASLNSRMTVGDIIGESIDI 124 Query: 117 HGMAGSRAERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDE 176 H ++ ERK+RIE LL VGLN DH RYPHEFSGGQRQRIGIAR+LAV P+FIVCDE Sbjct: 125 HNLSKGN-ERKERIEYLLKKVGLNGDHINRYPHEFSGGQRQRIGIARALAVEPEFIVCDE 183 Query: 177 PISALDVSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESE 236 PISALDVSIQAQVVN+L+ELQ+ LGLTYLFIAHDLSMVKHIS ++ VMYLG ++E+ ES Sbjct: 184 PISALDVSIQAQVVNMLEELQEELGLTYLFIAHDLSMVKHISTKIGVMYLGNLIEVGESS 243 Query: 237 ELYANPIHPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPI 278 ELY NP+HPYTK+LLSA+PVPDP+ A ++RI L E+ SPI Sbjct: 244 ELYNNPLHPYTKALLSAVPVPDPDEAAARQRIILEGEIPSPI 285 >CAC3635 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 350 Score = 374 bits (960), Expect = e-103, Method: Compositional matrix adjust. Identities = 192/282 (68%), Positives = 228/282 (80%), Gaps = 7/282 (2%) Query: 3 KNLIEVEGLKKYFNVGKGKV------LKAVDNINFTIREGETLGMVGESGCGKTTAGRTV 56 K L+EV+ LKK+F V KG +KAVD ++F I++GETLG+VGESGCGKTT GRT+ Sbjct: 29 KVLLEVKNLKKWFPVKKGFFGKNVSNVKAVDGVSFQIKKGETLGLVGESGCGKTTTGRTI 88 Query: 57 LRLYEPTAGSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDI 116 L+LYEPT+G + YNG DI KLS +M RR MQMIFQDPYASLN R TV DIIGE++DI Sbjct: 89 LKLYEPTSGQIIYNGKDIAKLSYKEMLPYRRKMQMIFQDPYASLNSRMTVGDIIGESIDI 148 Query: 117 HGMAGSRAERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDE 176 H + + ERK+RIE LL VGLN DH RYPHEFSGGQRQRIGIAR+LAV P+FIVCDE Sbjct: 149 HKLWTGK-ERKERIEYLLKKVGLNGDHINRYPHEFSGGQRQRIGIARALAVEPEFIVCDE 207 Query: 177 PISALDVSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESE 236 PISALDVSIQAQVVN+L+ELQ+ LGLTYLFIAHDLSMVKHIS ++ VMYLG ++E+ ES Sbjct: 208 PISALDVSIQAQVVNMLEELQEELGLTYLFIAHDLSMVKHISTKIGVMYLGNLIEVGESS 267 Query: 237 ELYANPIHPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPI 278 ELY NP+HPYTK+LLSA+PVPDP+ A ++RI L E+ SPI Sbjct: 268 ELYNNPLHPYTKALLSAVPVPDPDEAAARQRIILEGEIPSPI 309 >BS_oppF [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 334 Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust. Identities = 17/302 (5%), Positives = 47/302 (15%), Gaps = 9/302 (2%) Query: 1 LSKNLIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLY 60 ++ + L + ++ F + G + V+ Sbjct: 1 MNAVTEGRKVLLEIADLKVHFE-IKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGES 59 Query: 61 EPTAGSVKYNGTDIY-KLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGM 119 + + + + M + A + + +L+ Sbjct: 60 GCGKSTFARAIIGLVKATDGHVAWLGKELLGMKPDEWRAVRSDIQMIFQDPLASLNPRMT 119 Query: 120 AGSRAERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPIS 179 G R + + + + Sbjct: 120 IGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARAL 179 Query: 180 ALDVSIQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELY 239 L+ + + + + +A +Y Sbjct: 180 ILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 239 Query: 240 ANPIHPYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPIYAAGEKTNDSDYQLVEVSKGH 299 P A EK E+ Sbjct: 240 LGHAVELGTYDEVYHNPLHPYTRALMSA-----VPIPD--PDLEKNKTIQLLEGELPSPI 292 Query: 300 FV 301 Sbjct: 293 NP 294 >BS_ykfD [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 475 Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust. Identities = 22/274 (8%), Positives = 53/274 (19%) Query: 5 LIEVEGLKKYFNVGKGKVLKAVDNINFTIREGETLGMVGESGCGKTTAGRTVLRLYEPTA 64 ++ ++ + + + + ++ G L T A T+L Sbjct: 6 EGYMQTTQQNAPLKRTMKTRHLIMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGAL 65 Query: 65 GSVKYNGTDIYKLSAGKMKAMRRDMQMIFQDPYASLNPRFTVSDIIGEALDIHGMAGSRA 124 A + P + AL A Sbjct: 66 VVWLVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLTWTVALGSSFTAAGFC 125 Query: 125 ERKKRIEELLDMVGLNHDHATRYPHEFSGGQRQRIGIARSLAVNPKFIVCDEPISALDVS 184 + + + + + + S SL I A Sbjct: 126 MQYWFPQVPVWVWCVVFCAIIFGLNVISTRFFAEGEFWFSLVKVVTIIAFIILGGAAIFG 185 Query: 185 IQAQVVNLLKELQDRLGLTYLFIAHDLSMVKHISDRVAVMYLGKMVELAESEELYANPIH 244 + F L ++ + +++ +A E + Sbjct: 186 FIPMQDGSPAPGLSNITAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPRKVI 245 Query: 245 PYTKSLLSAIPVPDPEVEANKKRIHLHDELGSPI 278 P A + + + Sbjct: 246 PVAIRTTIARLIIFFIGTVFVLAALIPMQQVGVE 279 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,570,654 Number of extensions: 979997 Number of successful extensions: 10656 Number of sequences better than 1.0e-05: 2112 Number of HSP's gapped: 7747 Number of HSP's successfully gapped: 2331 Length of query: 306 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 200 Effective length of database: 26,153,027 Effective search space: 5230605400 Effective search space used: 5230605400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)