BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0264.0047.p
         (320 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

STM0236 [D] COG0037 Predicted ATPase of the PP-loop superfamily ...   123   4e-28
CAC2819 [M] COG0769 UDP-N-acetylmuramyl tripeptide synthase            56   6e-08

>STM0236 [D] COG0037 Predicted ATPase of the PP-loop superfamily implicated
           in cell cycle control
          Length = 430

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 15/200 (7%), Positives = 30/200 (15%), Gaps = 3/200 (1%)

Query: 31  VTDSRKITPACLFVPLIGDHFDGHDYXXXXXXXXXXXTLWQRDKGAAPENGSVILVDDTL 90
           +  SR+I  A                            +            +   V    
Sbjct: 10  LLSSRRILAAFSGGLDSTVLLHQLVLWRERHPDVTLRAIHIH---HGLSPHADSWVRHCE 66

Query: 91  TALQKLASAYLSQVAPQVVAVTGSNGKTTTKDMITALLEGQYKVHKTQGNFNNHIGLPLT 150
           T  ++     + +         G                             +       
Sbjct: 67  TVCERWQVPLVVERVTLADNGLGIEAHAREARYRAFAQTLLPGEVLATAQHLDDQCETFL 126

Query: 151 ILSMSGDVQIAVLEMGMSSRGEIXXXXXXXPPDVAVITNVGESHLLQLGSRKEIARAKLE 210
           +    G     +  MG  S             +                   E  +    
Sbjct: 127 LALKRGSGPAGLSAMGERSPFAGTLLLRPLLRETRKTLEQWAVRHGLCWIEDESNQDDAY 186

Query: 211 IAEGLKPGGLLIYNGDEPLL 230
               L+   L +     P  
Sbjct: 187 DRNFLRLRALPLLQQRWPHF 206


>CAC2819 [M] COG0769 UDP-N-acetylmuramyl tripeptide synthase
          Length = 483

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 2/110 (1%)

Query: 22  DMDKSIAGVVTDSRKITPACLFVPLIGDHFDGHDYXXXXXXXXXXXTLWQRDKGAAPENG 81
           D++ +I G+  +S+K+    +FV + G  FDGHD+            +   D   + EN 
Sbjct: 18  DININIEGISYNSKKVKQNYVFVSIKGARFDGHDFIKEAAQNGAAAVIIDEDFHDSIENT 77

Query: 82  SVILVDDTLTALQKLASAYLSQVAPQ--VVAVTGSNGKTTTKDMITALLE 129
           +++ V ++  AL  L + +  + + +  +V VTG+NGKTT    I  +LE
Sbjct: 78  TLVKVKNSKVALACLCNLFYEEPSRELNLVGVTGTNGKTTVIHYIRDMLE 127


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 20,512,106
Number of extensions: 746818
Number of successful extensions: 11611
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11619
Number of HSP's successfully gapped: 4
Length of query: 320
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 214
Effective length of database: 26,153,027
Effective search space: 5596747778
Effective search space used: 5596747778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)