BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0016.p (392 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_pyrAA [EF] COG0505 Carbamoylphosphate synthase small subunit 476 e-134 BH2537 [EF] COG0505 Carbamoylphosphate synthase small subunit 442 e-124 STM0558 [M] COG0463 Glycosyltransferases involved in cell wall b... 337 2e-92 BH2896 [EF] COG0505 Carbamoylphosphate synthase small subunit 323 3e-88 BS_carA [EF] COG0505 Carbamoylphosphate synthase small subunit 312 7e-85 >BS_pyrAA [EF] COG0505 Carbamoylphosphate synthase small subunit Length = 364 Score = 476 bits (1226), Expect = e-134, Method: Compositional matrix adjust. Identities = 218/354 (61%), Positives = 281/354 (79%), Gaps = 4/354 (1%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 M+ RL+L++G +F G AFG+ GEVVFNTG+TGYQE+LSDPSYCGQIVT+TYPLIGN Sbjct: 1 MKRRLVLENGAVFEGEAFGSLEHNMGEVVFNTGMTGYQEILSDPSYCGQIVTLTYPLIGN 60 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGI RDDFES+ PFV G +++ +PSNWR+ Y++D+ LK IPG+ IDTR LTR+I Sbjct: 61 YGINRDDFESITPFVKGLIIKELCELPSNWRSAYTLDEYLKMKNIPGLQGIDTRKLTRMI 120 Query: 121 RHYGTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYG 180 R G +K +S++ +E +++ + +T + RNQV++ S AY SPG +RIVLVD+G Sbjct: 121 RTAGALKGTFASSDEDIEAVLKRLNETELP--RNQVSQVSAKTAYPSPGRGKRIVLVDFG 178 Query: 181 AKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLG 240 K GILRELN R CDV+VVP+++TA+E+ +L PDGI LSNGPGDPKDVP A++ I +LG Sbjct: 179 MKHGILRELNKRKCDVIVVPYNITAEEVLQLKPDGIMLSNGPGDPKDVPEAIEMIKGVLG 238 Query: 241 EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESV 300 + P+FGICLGHQLFALACGA+TEK+KFGHRG NHPVKEL +G+ +TSQNHGYTV+ S+ Sbjct: 239 KVPLFGICLGHQLFALACGANTEKMKFGHRGSNHPVKELATGKVALTSQNHGYTVS--SI 296 Query: 301 RKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMI 354 KT+LEVTHI ND T+EGLKH PAF+VQYHPEA+PGP D+++LFDRF++MI Sbjct: 297 SKTELEVTHIAINDDTIEGLKHKTLPAFTVQYHPEASPGPEDANHLFDRFIEMI 350 >BH2537 [EF] COG0505 Carbamoylphosphate synthase small subunit Length = 362 Score = 442 bits (1137), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/360 (58%), Positives = 272/360 (75%), Gaps = 2/360 (0%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 M+ +L+L+DG++F G FG++ E +GEVVFNTG+TGYQE+LSDPSYCGQIVT+TYPLIGN Sbjct: 1 MKRQLILEDGSVFVGKGFGSDREMSGEVVFNTGMTGYQEMLSDPSYCGQIVTLTYPLIGN 60 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGI RDDFES+ P +HG +V+ +PSNWR+E S+D LLK IPG+S IDTR LTR+I Sbjct: 61 YGINRDDFESMNPAIHGLIVKEACDIPSNWRSEESLDSLLKAKQIPGLSGIDTRKLTRLI 120 Query: 121 RHYGTMKAILTTSNKRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVDYG 180 R +GT+K L + VE++++ + T +QV+R ST Y+ PG +R+VLVDYG Sbjct: 121 RMHGTLKGQLCPLDVDVEQIVQELKATPTPT--DQVSRVSTRDPYHVPGPGKRVVLVDYG 178 Query: 181 AKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISELLG 240 K IL+EL R C+V VVP+ +A+E+ RL PDG+ LSNGPG+P+DV V+ I LLG Sbjct: 179 MKHNILQELIRRNCEVFVVPYHTSAEEVLRLGPDGVLLSNGPGNPEDVSEGVEMIRNLLG 238 Query: 241 EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEESV 300 + P+FGICLGHQLFALACGA TEKL+FGHRG NHPV+E +G IT+QNHGYTV E S+ Sbjct: 239 KVPLFGICLGHQLFALACGAKTEKLRFGHRGSNHPVRERSTGLIEITAQNHGYTVTEGSL 298 Query: 301 RKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIADHKAK 360 TDL VTH ND T+EGL H +PAFSVQYHPEA+PGP DS+ LFDRF++++ +K + Sbjct: 299 VNTDLIVTHEAVNDGTIEGLAHKVHPAFSVQYHPEASPGPEDSNVLFDRFIKLMESNKHR 358 >STM0558 [M] COG0463 Glycosyltransferases involved in cell wall biogenesis Length = 308 Score = 337 bits (864), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 0/393 (0%), Positives = 0/393 (0%), Gaps = 44/393 (11%) Query: 2 QARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGNY 61 + + + + E + I + D + + Sbjct: 4 SLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSKDATESIINKIAASDPLVIP 63 Query: 62 GITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRIIR 121 +F G +AV +++ + D + R R Sbjct: 64 LSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDR 123 Query: 122 HYGTMKAILTTSN-------KRVEELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERI 174 T ++ E +G + P + Sbjct: 124 STDGRMKRKTAEWFYKLHNKISNPKIEENVG----DFRLMSREVVENIK--QMPERNLFM 177 Query: 175 VLVDYGAKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKT 234 V R V S P Sbjct: 178 KGVLSWVGGKTDVVEYARAERVAGDSKFNGWKLWNLALEGITSFSTFPLRIWTYIGLFIA 237 Query: 235 ISELLG-EYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGY 293 L + I + L G E Sbjct: 238 GMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQLIGIGILGEYIGRIYIETKKRP 297 Query: 294 TVNEESVRKTDL------------------------------EVTHINNNDKTVEGLKHT 323 Sbjct: 298 357 Query: 324 RYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIAD 356 Sbjct: 358 390 >BH2896 [EF] COG0505 Carbamoylphosphate synthase small subunit Length = 359 Score = 323 bits (828), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 167/357 (46%), Positives = 218/357 (61%), Gaps = 9/357 (2%) Query: 1 MQARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGN 60 M+A L+L G F G A+ + GEVVF TG+TGYQEVLSDPS+ GQ+V TYPLIGN Sbjct: 1 MKAYLVLATGETFAGEIANAKEDVYGEVVFFTGMTGYQEVLSDPSFKGQLVVFTYPLIGN 60 Query: 61 YGITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRII 120 YGI DFES P G +V ++ A S+ ++ +P ++ IDTR + + I Sbjct: 61 YGINASDFESKEPQAAGLIVSEQSEEGHHYEATQSLQQFCDQHQLPLLTGIDTRAVVKRI 120 Query: 121 RHYGTMKAILTTSNKRV--EELMEMMGDTTIEELRNQVARTSTTAAYNSPGNKERIVLVD 178 R G M A++TT RV EE + + ++E+ ST GN IVL+D Sbjct: 121 REQGDMPAVITTDLSRVSFEEWVPLSERALVDEV-------STKKVETFEGNGPHIVLID 173 Query: 179 YGAKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGDPKDVPYAVKTISEL 238 YG K IL L R C V +VP+DV+ + ++ LNPDG+ SNGPGDPK + + TI L Sbjct: 174 YGFKQSILNSLLKRDCQVTIVPYDVSFEVVQELNPDGLLFSNGPGDPKQIEDRLPTIYRL 233 Query: 239 LGEYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGRCFITSQNHGYTVNEE 298 YP GICLGHQL ALA GADTEKL+FGHRG N PV L+S R ++TSQNH Y V E+ Sbjct: 234 ASTYPSLGICLGHQLLALAFGADTEKLRFGHRGANQPVINLKSNRVYMTSQNHSYVVKED 293 Query: 299 SVRKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDSSYLFDRFLQMIA 355 S+++TD + T N ND ++EGL H P +VQ+HPEA PGP DS +F F+ +A Sbjct: 294 SLQRTDWDATFKNINDGSIEGLTHKYLPIQTVQFHPEAHPGPSDSDEIFHSFIDDVA 350 >BS_carA [EF] COG0505 Carbamoylphosphate synthase small subunit Length = 353 Score = 312 bits (799), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 0/375 (0%), Positives = 0/375 (0%), Gaps = 20/375 (5%) Query: 3 ARLLLQDGTLFTGTAFGAEGEKTGEVVFNTGITGYQEVLSDPSYCGQIVTMTYPLIGNYG 62 L + TG S G Sbjct: 5 LVLEDGTSFSGELDGHENCTGEAVFFTGMTGYQEVLTDPSYKGQIIVFTYPLIGNYGINE 64 Query: 63 ITRDDFESVRPFVHGFVVRRHEAVPSNWRAEYSVDDLLKEYGIPGISEIDTRMLTRIIRH 122 + + + H + + + + R Sbjct: 65 KDFESKKPQVKAAVVYEACDHFSHYEAVYSLKEYLQKWNIPLLTHVDTRAVVKKIRANGT 124 Query: 123 YGTMKAILTTSNKRVEEL-------------MEMMGDTTIEELRNQVARTSTTAAYNSPG 169 G + + G+ I + ++ ++ Sbjct: 125 MGATVTASKEGAEIALQPENVAEQASAQEISTFGDGNKHIALIDFGYKKSIASSLVKRGC 184 Query: 170 NKE-----RIVLVDYGAKTGILRELNNRGCDVVVVPHDVTADEIRRLNPDGIQLSNGPGD 224 ++ V GI+ + I R GI L + Sbjct: 185 KVTVVPYQQMEAVYNIKPDGIVLSNGPGDPKAIQPYLGKIKSIISRFPTLGICLGHQLIA 244 Query: 225 PKDVPYAVKTISELL-GEYPIFGICLGHQLFALACGADTEKLKFGHRGGNHPVKELESGR 283 K +P+ + + + + Sbjct: 245 LAFGGNTFKLPFGHRGANHPVIDRKTKRVFMTSQNHSYVVDEQSINEEELTIRFHHVNDT 304 Query: 284 CFITSQNHGYTVNEESVRKTDLEVTHINNNDKTVEGLKHTRYPAFSVQYHPEAAPGPHDS 343 + V Sbjct: 305 SVEGLAHKKLPVMSVQF- 363 Query: 344 SYLFDRFLQMIADHK 358 Sbjct: 364 378 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 30,422,935 Number of extensions: 1246303 Number of successful extensions: 2417 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 2368 Number of HSP's successfully gapped: 42 Length of query: 392 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 284 Effective length of database: 25,922,359 Effective search space: 7361949956 Effective search space used: 7361949956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 117 (49.7 bits)