BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0264.0015.p (1073 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_pyrAB [EF] COG0458 Carbamoylphosphate synthase large subunit ... 1425 0.0 BH2536 [EF] COG0458 Carbamoylphosphate synthase large subunit (s... 1414 0.0 CAC2644 [EF] COG0458 Carbamoylphosphate synthase large subunit (... 1124 0.0 MA2143 [EF] COG0458 Carbamoylphosphate synthase large subunit (s... 1049 0.0 BH2895 [EF] COG0458 Carbamoylphosphate synthase large subunit (s... 1008 0.0 >BS_pyrAB [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Length = 1071 Score = 1425 bits (3690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 693/1069 (64%), Positives = 841/1069 (78%), Gaps = 9/1069 (0%) Query: 1 MPKNEKLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGVEVVLINSNPATIMTDTNM 60 MPK + KILVIGSGPI+IGQAAEFDYAGTQAC ALKEEG EV+L+NSNPATIMTDT M Sbjct: 1 MPKRVDINKILVIGSGPIIIGQAAEFDYAGTQACLALKEEGYEVILVNSNPATIMTDTEM 60 Query: 61 ADKVYIEPITLEFVTGIIRQERPDXXXXXXXXXXXXNMAVELARAGVLEQENVKLLGTQL 120 AD+VYIEP+T EF+T IIR+ERPD N+AVEL+ GVL + V++LGT+L Sbjct: 61 ADRVYIEPLTPEFLTRIIRKERPDAILPTLGGQTGLNLAVELSERGVLAECGVEVLGTKL 120 Query: 121 GSIEKAEDRDLFRELMRELEQPVPESTIITSVEEAMGFAAGIGYPLIVRPAYTLGGTGGG 180 +I++AEDRDLFR LM EL +PVPES II S+EEA F + IG+P+IVRPAYTLGGTGGG Sbjct: 121 SAIQQAEDRDLFRTLMNELNEPVPESEIIHSLEEAEKFVSQIGFPVIVRPAYTLGGTGGG 180 Query: 181 ICDNEEELRETVKAGIRYSPIGQCLVEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV 240 IC NE EL+E V+ G++ SP+ QCL+EKSIAG KE+EYEVMRD+ D+ IVVCNMEN DPV Sbjct: 181 ICSNETELKEIVENGLKLSPVHQCLLEKSIAGYKEIEYEVMRDSQDHAIVVCNMENIDPV 240 Query: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVN 300 G+HTGDSIVVAPSQTLSDREYQ+LR+ SLK+IRAL IEGGCNVQ ALDP S+QYY+IEVN Sbjct: 241 GIHTGDSIVVAPSQTLSDREYQLLRNVSLKLIRALGIEGGCNVQLALDPDSFQYYIIEVN 300 Query: 301 PRVSRSSALASKATGYPIAKMAAKIALGYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW 360 PRVSRSSALASKATGYPIAK+AAKIA+G +LDE++NPVTG+TYA FEP LDY+VSKIPRW Sbjct: 301 PRVSRSSALASKATGYPIAKLAAKIAVGLSLDEMMNPVTGKTYAAFEPALDYVVSKIPRW 360 Query: 361 PFDKFIYANRKLGTQMKATGEVMAIGRTFEESIHKAIRSLEIGIHRFKLPGAEQLEDSVL 420 PFDKF ANRKLGTQMKATGEVMAIGRT EES+ KA+RSLE ++ +L A + D +L Sbjct: 361 PFDKFESANRKLGTQMKATGEVMAIGRTLEESLLKAVRSLEADVYHLELKDAADISDELL 420 Query: 421 RTRLAKADDERLFLIAEAFRRGYGLQEIQDITSVDWWFLSKIEGLVNFEEVIRSEATLSP 480 R+ KA DERLF +AEA+RRGY ++++ + +++D +FL K+ G+V FE+ +++ A Sbjct: 421 EKRIKKAGDERLFYLAEAYRRGYTVEDLHEFSAIDVFFLHKLFGIVQFEKELKANAG-DT 479 Query: 481 ETLYQAKRKGFTDRAIAEIRAEGRPGLEQTKESEVRVLRLQQGLVPVFKMVDTCAAEFXX 540 + L +AK GF+D+ I+ + KESE+ LR Q G+ PVFKMVDTCAAEF Sbjct: 480 DVLRRAKELGFSDQYISREW--------KMKESELYSLRKQAGIAPVFKMVDTCAAEFES 531 Query: 541 XXXXXXXXXXXXXXVIHSDKQKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVII 600 + +DK+ V+VLGSGPIRIGQG+EFDY+TVH+VWAI++AGYEA+I+ Sbjct: 532 ETPYFYSTYEEENESVVTDKKSVMVLGSGPIRIGQGVEFDYATVHSVWAIKQAGYEAIIV 591 Query: 601 NNNPETVSTDFNTSDRLYFEPLFFEDVMNVIAQENPIGVIVQFGGQTXXXXXXXXXXXGV 660 NNNPETVSTDF+ SD+LYFEPL EDVM++I E P+GV+VQFGGQT GV Sbjct: 592 NNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPMGVVVQFGGQTAINLADELSARGV 651 Query: 661 NILGTSLDSIDEAEDRKKFEALLARLDIAQPKGKTVINIDEAVETAQSLGYPVLVRPSYV 720 ILGTSL+ +D AEDR KFE L L + QP GKT ++++AV A +GYPVLVRPSYV Sbjct: 652 KILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVNQAVSIASDIGYPVLVRPSYV 711 Query: 721 LGGRAMEIVYNDTELLSYMAEAVKVNPEHPVLIDRYMLGKEVEVDAICDGETVVIPGIME 780 LGGRAMEIVY++ ELL YM AVK+NP+HPVLIDRY+ GKE+EVDA+ DGETVVIPGIME Sbjct: 712 LGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVSDGETVVIPGIME 771 Query: 781 HVERAGVHSGDSIAVYPPQYLDEGLKQKIADITIKIAKELKTVGLVNIQFVIYQNEVYVI 840 H+ERAGVHSGDSIAVYPPQ L E +K+KI TI +AK L VGL+NIQFV+ Q EVYV+ Sbjct: 772 HIERAGVHSGDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGLLNIQFVLSQGEVYVL 831 Query: 841 EVNPRSSRTVPFLSKVTGIPMAHLATKTILGGKLKEEGYTEGLWPESDYVSVKVPVFSFA 900 EVNPRSSRTVPFLSK+TGIPMA+LATK ILG KL GYTEGL PE V VK PVFSFA Sbjct: 832 EVNPRSSRTVPFLSKITGIPMANLATKIILGQKLAAFGYTEGLQPEQQGVFVKAPVFSFA 891 Query: 901 KLRRVEPTLGPEMKSTGEVMGRDKLYAKALYKGLIGAGMKIPTTGAIIVTVADKDKAEAV 960 KLRRV+ TLGPEMKSTGEVMG+D KALYK LI +G++IP G++++TVADKDK E + Sbjct: 892 KLRRVDITLGPEMKSTGEVMGKDSTLEKALYKALIASGIQIPNYGSVLLTVADKDKEEGL 951 Query: 961 ELMKGFHAMGYKIIATGGTALALEQAGLNVMNVNKLDEGEPTILDLIRSGQANFVFNTLT 1020 + K FHA+GY I+AT GTA L++A + V K+ + P +LD+IR+G+A FV NTLT Sbjct: 952 AIAKRFHAIGYNILATEGTAGYLKEASIPAKVVGKIGQDGPNLLDVIRNGEAQFVINTLT 1011 Query: 1021 KGKTPERDGFRIRREAVENGVVCMTSLDTVTALLRMLQTINFSSQSMPA 1069 KGK P RDGFRIRRE+VENGV C+TSLDT A+LR+L+++ F + MPA Sbjct: 1012 KGKQPARDGFRIRRESVENGVACLTSLDTAEAILRVLESMTFRADQMPA 1060 >BH2536 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Length = 1062 Score = 1414 bits (3659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 701/1068 (65%), Positives = 840/1068 (78%), Gaps = 9/1068 (0%) Query: 1 MPKNEKLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGVEVVLINSNPATIMTDTNM 60 M K E +KKILVIGSGPIVIGQAAEFDYAGTQACQALKEEG EV+L+NSNPATIMTDT M Sbjct: 1 MGKREDIKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGYEVILVNSNPATIMTDTTM 60 Query: 61 ADKVYIEPITLEFVTGIIRQERPDXXXXXXXXXXXXNMAVELARAGVLEQENVKLLGTQL 120 AD+VYIEP+TLEFV+ IIR ERPD NMAVEL +AG+L++ NV+LLGT+L Sbjct: 61 ADRVYIEPLTLEFVSRIIRMERPDGILPTLGGQTGLNMAVELDQAGILKEYNVELLGTKL 120 Query: 121 GSIEKAEDRDLFRELMRELEQPVPESTIITSVEEAMGFAAGIGYPLIVRPAYTLGGTGGG 180 SI++AEDRDLFR LM+EL +PVP+S II ++EEA F +GYP+IVRPAYTLGGTGGG Sbjct: 121 DSIQQAEDRDLFRALMKELNEPVPDSEIIHTLEEAYTFVERVGYPIIVRPAYTLGGTGGG 180 Query: 181 ICDNEEELRETVKAGIRYSPIGQCLVEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV 240 + NEE+L E V +G++YSP+ QCLVEKSIAG KE+EYEVMRD D+ IVVCNMEN DPV Sbjct: 181 LVYNEEDLVEIVTSGLKYSPVTQCLVEKSIAGFKEIEYEVMRDGKDHAIVVCNMENIDPV 240 Query: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVN 300 GVHTGDSIVVAPSQTLSDREYQMLR++SLKIIRAL IEGGCNVQFALDP S+QYY+IEVN Sbjct: 241 GVHTGDSIVVAPSQTLSDREYQMLRNSSLKIIRALGIEGGCNVQFALDPDSFQYYIIEVN 300 Query: 301 PRVSRSSALASKATGYPIAKMAAKIALGYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW 360 PRVSRSSALASKATGYPIAK+AAKIA+GYTLDE++NP+T TYA FEP LDY+VSKIPRW Sbjct: 301 PRVSRSSALASKATGYPIAKIAAKIAVGYTLDELLNPITQTTYASFEPALDYVVSKIPRW 360 Query: 361 PFDKFIYANRKLGTQMKATGEVMAIGRTFEESIHKAIRSLEIGIHRFKLPGAEQLEDSVL 420 PFDKF ANR LGTQMKATGEVMAIGR EES+ KA+RSLE G++ P L+ L Sbjct: 361 PFDKFEAANRSLGTQMKATGEVMAIGRNLEESLLKAVRSLEAGVYHLDQPDVNDLDKESL 420 Query: 421 RTRLAKADDERLFLIAEAFRRGYGLQEIQDITSVDWWFLSKIEGLVNFEEVIRSEATLSP 480 +L K DDERLF + EA RRGY ++E+ +T +D +FL ++ E ++ E Sbjct: 421 EKKLTKPDDERLFALGEAIRRGYTIEELWALTKIDRFFLRSFARIIQLETQLK-ENVGDL 479 Query: 481 ETLYQAKRKGFTDRAIAEIRAEGRPGLEQTKESEVRVLRLQQGLVPVFKMVDTCAAEFXX 540 E L +AK +GF+D IA++ T E EV LR+ GL PV+KMVDTCAAEF Sbjct: 480 ELLKEAKERGFSDMIIADLWG--------TSEQEVYELRMNHGLSPVYKMVDTCAAEFAS 531 Query: 541 XXXXXXXXXXXXXXVIHSDKQKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVII 600 +DK+ ++VLGSGPIRIGQGIEFDY+TVH VWAI++AGYEA+I+ Sbjct: 532 ATPYFYGTYEEENESERTDKKSILVLGSGPIRIGQGIEFDYATVHTVWAIKEAGYEAIIV 591 Query: 601 NNNPETVSTDFNTSDRLYFEPLFFEDVMNVIAQENPIGVIVQFGGQTXXXXXXXXXXXGV 660 NNNPETVSTDF+TSD+LYFEPL EDVM+++ E P GVIVQFGGQT GV Sbjct: 592 NNNPETVSTDFSTSDKLYFEPLTVEDVMHIVNLEQPEGVIVQFGGQTAINLASELAARGV 651 Query: 661 NILGTSLDSIDEAEDRKKFEALLARLDIAQPKGKTVINIDEAVETAQSLGYPVLVRPSYV 720 I+GT+L+ +D AEDR KFE L L+I QP G T +I+EA + A+ +GYPVLVRPSYV Sbjct: 652 KIIGTALEDMDRAEDRDKFEQTLVELNIPQPLGDTATSIEEARQIAERIGYPVLVRPSYV 711 Query: 721 LGGRAMEIVYNDTELLSYMAEAVKVNPEHPVLIDRYMLGKEVEVDAICDGETVVIPGIME 780 LGGRAMEIVY + ELL+YMA AVKVNP+HPVLIDRY+ GKE+EVDAI DGE V IPGIME Sbjct: 712 LGGRAMEIVYKEEELLNYMAHAVKVNPKHPVLIDRYLTGKELEVDAISDGENVYIPGIME 771 Query: 781 HVERAGVHSGDSIAVYPPQYLDEGLKQKIADITIKIAKELKTVGLVNIQFVIYQNEVYVI 840 H+ERAGVHSGDSIAVYPPQ + E LKQK+ + TI++A+ L+ VGL+NIQFV ++++VYV+ Sbjct: 772 HIERAGVHSGDSIAVYPPQTVPESLKQKLIERTIELARGLRIVGLLNIQFVWHKDDVYVL 831 Query: 841 EVNPRSSRTVPFLSKVTGIPMAHLATKTILGGKLKEEGYTEGLWPESDYVSVKVPVFSFA 900 EVNPRSSRTVPFLSKVTG+PMA++ATK +LG L + GY G PE+ VSVKVPVFSFA Sbjct: 832 EVNPRSSRTVPFLSKVTGVPMANVATKVMLGKTLPQLGYETGYHPEAKEVSVKVPVFSFA 891 Query: 901 KLRRVEPTLGPEMKSTGEVMGRDKLYAKALYKGLIGAGMKIPTTGAIIVTVADKDKAEAV 960 KLRRV+ TLGPEMKSTGEVMGRDK KALYKGLI +GM IPT G+++ T+ADKDK EA+ Sbjct: 892 KLRRVDITLGPEMKSTGEVMGRDKTLEKALYKGLIASGMSIPTHGSVLFTIADKDKQEAI 951 Query: 961 ELMKGFHAMGYKIIATGGTALALEQAGLNVMNVNKLDEGEPTILDLIRSGQANFVFNTLT 1020 L K F+ +G+ I+AT GTA L + G+ V VNK+ + +P +LD+IR+G A FV NTLT Sbjct: 952 SLAKRFYQIGFSILATEGTAHILHEEGIPVTTVNKISDEKPHLLDVIRAGDAQFVINTLT 1011 Query: 1021 KGKTPERDGFRIRREAVENGVVCMTSLDTVTALLRMLQTINFSSQSMP 1068 +GK P RDGFRIRRE+VENGVVC+TSLDT ALLR+L++I FS++SMP Sbjct: 1012 RGKQPARDGFRIRRESVENGVVCLTSLDTAEALLRVLESITFSAESMP 1059 >CAC2644 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Length = 1065 Score = 1124 bits (2907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 568/1060 (53%), Positives = 743/1060 (70%), Gaps = 15/1060 (1%) Query: 1 MPKNEKLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGVEVVLINSNPATIMTDTNM 60 MP ++ +KK+L+IGSGP IGQAAEFDY+GTQAC+A+KEEG+E VL+NSNPATIMTD+++ Sbjct: 1 MPLDKTIKKVLIIGSGPNNIGQAAEFDYSGTQACKAVKEEGIETVLVNSNPATIMTDSHI 60 Query: 61 ADKVYIEPITLEFVTGIIRQERPDXXXXXXXXXXXXNMAVELARAGVLEQENVKLLGTQL 120 ADKVYIEP+T E V II +ERPD N+A+ L AGVL++ NV+LLG Sbjct: 61 ADKVYIEPLTEEAVEKIIEKERPDGILAGFGGQTALNLAMNLNDAGVLDKYNVRLLGINS 120 Query: 121 GSIEKAEDRDLFRELMRELEQPVPESTIITSVEEAMGFAAGIGYPLIVRPAYTLGGTGGG 180 +I+KAEDR+ F+ LM E+++PVP+S I T ++E + F G P+I+RPA+TLGGTGGG Sbjct: 121 EAIKKAEDREEFKNLMEEIDEPVPKSIIATHIDECIDFVNKFGLPVIIRPAFTLGGTGGG 180 Query: 181 ICDNEEELRETVKAGIRYSPIGQCLVEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV 240 I EEL+E GI+ SPIGQ L+E+S+AG KE+EYEVMRDA DNCI+VCNMEN DPV Sbjct: 181 IASTMEELKEICDRGIKMSPIGQILLEQSVAGWKELEYEVMRDAKDNCIIVCNMENLDPV 240 Query: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVN 300 GVHTGDSIV APSQTL+D+EY MLR ++LKIIR L IEGGCN+QFAL+P+S Y VIEVN Sbjct: 241 GVHTGDSIVTAPSQTLTDKEYHMLRHSALKIIRNLKIEGGCNIQFALNPKSNDYIVIEVN 300 Query: 301 PRVSRSSALASKATGYPIAKMAAKIALGYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW 360 PRVSRSSALASKA GYPIAK+AAKIA+GY+LDE+ N VT + ACFEP LDY+V KIP+W Sbjct: 301 PRVSRSSALASKAAGYPIAKIAAKIAVGYSLDELKNYVTKNSSACFEPALDYVVVKIPKW 360 Query: 361 PFDKFIYANRKLGTQMKATGEVMAIGRTFEESIHKAIRSLEIGIHRFKLPGAEQLEDSVL 420 PFDKF A R LGTQMKATGEVMAI R FE ++ KA+ SLE I +L E L Sbjct: 361 PFDKFNTAERHLGTQMKATGEVMAIDRDFESALLKAVTSLEGKISGLRLEKFEYTTVREL 420 Query: 421 RTRLAKADDERLFLIAEAFRRGYGLQEIQDITSVDWWFLSKIEGLVNFEEVIRSEATLSP 480 ++ K DDER+F IAEAFRRG +++I ++T +D W+L+ I +++ E+ ++ + Sbjct: 421 LEKIKKQDDERIFAIAEAFRRGVDVKQIHEVTEIDNWYLNGINRIIDMEKELQDKNNKDK 480 Query: 481 E-TLYQAKRKGFTDRAIAEIRAEGRPGLEQTKESEVRVLRLQQGLVPVFKMVDTCAAEFX 539 + ++ +AK+ GFT IA I + +E +++ + + PVFKMVDTC+ EF Sbjct: 481 DKSIIKAKKMGFTVAEIARITS--------LEEGKIKNILNVNNVKPVFKMVDTCSGEFE 532 Query: 540 XXXXXXXXXXXXXXXVIHSDKQKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVI 599 +D +K++V+GSGPIRIGQGIEFDY VH VWAI++AGY+++I Sbjct: 533 AETPYYYSSYENEDENEVTDDKKIVVIGSGPIRIGQGIEFDYCCVHGVWAIKEAGYKSII 592 Query: 600 INNNPETVSTDFNTSDRLYFEPLFFEDVMNVIAQENPIGVIVQFGGQTXXXXXXXXXXXG 659 INNNPETVSTDF+T+D+LYFE L+ ++VMN+I +E P GVIVQFGGQT G Sbjct: 593 INNNPETVSTDFDTADKLYFESLYIDNVMNIIEKEKPEGVIVQFGGQTAINLADKLYKNG 652 Query: 660 VNILGTSLDSIDEAEDRKKFEALLARLDIAQPKGKTVINIDEAVETAQSLGYPVLVRPSY 719 V ILGTS +SID AEDR+KF LL L+I Q KG V +++EA E + +GYPV+VRPSY Sbjct: 653 VKILGTSFESIDLAEDREKFSELLKELNIPQAKGMAVTSMEEAYEAVKEIGYPVIVRPSY 712 Query: 720 VLGGRAMEIVYNDTELLSYMAEAVKVNPEHPVLIDRYMLGKEVEVDAICDGETVVIPGIM 779 V+GGRAM++VY+ L YM EAV ++ EHPVLID+Y+ G E+EVD I DGE ++IPGIM Sbjct: 713 VIGGRAMQVVYDKLALQKYMTEAVTLSTEHPVLIDKYIKGTEIEVDTISDGENILIPGIM 772 Query: 780 EHVERAGVHSGDSIAVYPPQYLDEGLKQKIADITIKIAKELKTVGLVNIQFVIYQNEVYV 839 EH+ER GVHSGDSI +YP L + + K+ T +AK L+ GL+NIQ+V VYV Sbjct: 773 EHIERTGVHSGDSITMYPYHTLPKEVVDKLVKYTKSLAKALEVKGLMNIQYVYDGENVYV 832 Query: 840 IEVNPRSSRTVPFLSKVTGIPMAHLATKTILGGKLKEEGYTEGLWPESDYVSVKVPVFSF 899 IEVNPR+SRTVP LSKVTG+PM LA + + G LKE GY L ++ +VKVPVFS Sbjct: 833 IEVNPRASRTVPILSKVTGVPMVKLAVEILTGKNLKELGYGVDLKKDNKLYAVKVPVFSN 892 Query: 900 AKLRRVEPTLGPEMKSTGEVMGRDKLYAKALYKGLIGAGMKIPTTGA-IIVTVADKDKAE 958 KL V+ LGPEM+STGEVMG D + A+YKG AG+++P G + V++ D DK E Sbjct: 893 EKLANVDIYLGPEMRSTGEVMGIDSDFEVAIYKGFRAAGIEVPKDGGNLYVSIKDVDKQE 952 Query: 959 AVELMKGFHAMGYKIIATGGTALALEQAGLNVMNVNKLDEGEPTILDLIRSGQANFVFNT 1018 +V ++K + GYKI A+ GT L++ G++ V + D+ ++ I G+ N + N+ Sbjct: 953 SVPIIKKYTEFGYKIYASLGTGKFLQKQGIDC-EVLRTDD----LMKAIGDGKINLIINS 1007 Query: 1019 LTKGKTPERDGFRIRREAVENGVVCMTSLDTVTALLRMLQ 1058 T+G T GF IRR+A E V T +DT A L ++ Sbjct: 1008 PTRGNTVGTRGFSIRRKAAEYKVGAFTCIDTAKAFLTAIK 1047 >MA2143 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Length = 211 Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 0/1069 (0%), Positives = 0/1069 (0%), Gaps = 26/1069 (2%) Query: 1 MPKNEKLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGVEVVLINSNPATIMTDTNM 60 M K ++L+ + + F L V +N A + N Sbjct: 1 MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANT 60 Query: 61 ADKVYIEPITLEFVTGIIRQERPDXXXXXXXXXXXXNMAVELARAGVLEQENVKLLGTQL 120 + + + Sbjct: 61 PAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVGRK 120 Query: 121 GSIEKAEDRDLFRELMRELEQPVPESTIITSVEEAMGFAAGIGYPLIVRPAYTLGGTGGG 180 + + + + + + + + ++ Sbjct: 121 TANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHWLI 180 Query: 181 ICDNEEELRETVKAGIRYSPIGQCLVEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV 240 Sbjct: 181 240 Query: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVN 300 Sbjct: 241 -- 298 Query: 301 PRVSRSSALASKATGYPIAKMAAKIALGYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW 360 Sbjct: 299 358 Query: 361 PFDKFIYANRKLGTQMKATGEVMAIGRTFEESIHKAIRSLEIGIHRFKLPGAEQLEDSVL 420 Sbjct: 359 ---- 414 Query: 421 RTRLAKADDERLFLIAEAFRRGYGLQEIQDITSVDWWFLSKIEGLVNFEEVIRSEATLSP 480 Sbjct: 415 - 473 Query: 481 ETLYQAKRKGFTDRAIAEIRAEGRPGLEQTKESEVRVLRLQQGLVPVFKMVDTCAAEFXX 540 Sbjct: 474 -------- 525 Query: 541 XXXXXXXXXXXXXXVIHSDKQKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYEAVII 600 Sbjct: 526 585 Query: 601 NNNPETVSTDFNTSDRLYFEPLFFEDVMNVIAQENPIGVIVQFGGQTX-------XXXXX 653 Sbjct: 586 645 Query: 654 XXXXXGVNILGTSLDSIDEAEDRKKFEALLARLDIAQPKGKTVINIDEAVETAQSLGYPV 713 Sbjct: 646 705 Query: 714 LVRPSYVLGGRAMEIVYNDTELLSYMAEAVKVNPEHPVLIDRYMLGK-EVEVDAICDGET 772 Sbjct: 706 765 Query: 773 VVIPGIMEHVERAGVHSGDSIAVYPPQYLDEGLKQKIADITIKIAKELKTVGLVNIQFVI 832 Sbjct: 766 825 Query: 833 YQNEVYVIEVNPRSSRTVPFLSKVTGIPMAHLATKTILGGKLKEEGYTEGLWPESDYVSV 892 Sbjct: 826 -- 883 Query: 893 KVPVFSFAKLRRVEPTLGPEMKSTGEVMGRDKLYAKALYKGLIGAGMKIPTTGAIIVTVA 952 Sbjct: 884 943 Query: 953 DKDKAEAVELMKGFHAMGYKIIATGGTALALEQAGLNVMNVNKLDEGEPTILDLIRSGQA 1012 Sbjct: 944 1003 Query: 1013 NFVFNTLTKGKTPERDGFRIRREAVENGVVCMTSLDTVTALLRMLQTIN 1061 Sbjct: 1004 - 1051 >BH2895 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Length = 297 Score = 1008 bits (2607), Expect = 0.0, Method: Compositional matrix adjust. Identities = 0/982 (0%), Positives = 0/982 (0%), Gaps = 17/982 (1%) Query: 1 MPKNEKLKKILVIGSGPIVIGQAAEFDYAGTQACQALKEEGVEVVLINSNPATIMTDTNM 60 M + S + + + + + E +++ Sbjct: 1 MRSPICHLFSAINSSPFKIAPEKEQDLKTIVDDKKIIISVVSEPGFNIRVRKNESNNSHE 60 Query: 61 ADKVYIEPITLEFVTGIIRQERPDXXXXXXXXXXXXNMAVELARAGVLEQENVKLLGTQL 120 + + + ++ + E Q Sbjct: 61 IVLTVASLEYIWAFSNFFWVFTQEYSKSQKNNDEHFDLTGKNRLKKSDELLKWARKNLQT 120 Query: 121 GSIEKAEDRDLFRELMRELEQPVPESTIITSVEEAMGFAAGIGYPLIVRPAYTLGGTGGG 180 E + E + + ++ I A I + ++ P T + Sbjct: 121 TGCESWPKKCPKPEAYLQGSEDSQVASEIFLCAIAWILHHEISHVVLQHPLVTTAFSTQE 180 Query: 181 ICDNEEELRETVKAGIRYSPIGQCLVEKSIAGMKEVEYEVMRDANDNCIVVCNMENFDPV 240 + + + + + S IA + + Sbjct: 181 EREADSHATKWILGNLYESAPELKKRALGIATAVLCIQSLEVENYFCLQNTHPAAYERIY 240 Query: 241 GVHTGDSIVVAPSQTLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVN 300 Sbjct: 241 300 Query: 301 PRVSRSSALASKATGYPIAKMAAKIALGYTLDEIVNPVTGQTYACFEPTLDYIVSKIPRW 360 Sbjct: 301 360 Query: 361 PFDKFIYANRKLGTQMKATGEVMAIGRTFEESIHKAIRSLEIGIHRFKLPGAEQLEDSVL 420 Sbjct: 361 420 Query: 421 RTRLAKADDERLFLIAEAFRRGYGLQEIQDITSVDWWFLSKIEGLVNFEEVIRSEA--TL 478 Sbjct: 421 480 Query: 479 SPETLYQAKRKGFTDRAIAEIRAEGRPGLEQTKESEVRVLRLQQGLVPVFKMVDTCAAEF 538 Sbjct: 481 -------- 532 Query: 539 XXXXXXXXXXXXXXXXVIHSD--KQKVIVLGSGPIRIGQGIEFDYSTVHAVWAIQKAGYE 596 Sbjct: 533 592 Query: 597 AVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIAQENPIGVIVQFGGQTXXXXXXXXX 656 Sbjct: 593 652 Query: 657 XXGVNILGTSLDSIDEAEDRKKFEALLARLDIAQPKGKTVINIDEAVETAQSLGYPVLVR 716 Sbjct: 653 712 Query: 717 PSYVLGGRAMEIVYNDTELLSYMAEAVKVNPEHPVLIDRYMLGKEVEVDAICDGETVVIP 776 Sbjct: 713 - 771 Query: 777 GIMEHVERAGVHSGDSIAVYPPQYLDEGLKQKIADITIKIAKELKTVGLVNIQFVIYQNE 836 Sbjct: 772 831 Query: 837 VYVIEVNPRSSRTVPFLSKVTGIPMAHLATKTILGGKLKEEGYTEGLWPESDYVSVKVPV 896 Sbjct: 832 891 Query: 897 FSFAKLRRVEPTLGPEMKSTGEVMGRDKLYAKALYKGLIGAGMKIPT----TGAIIVTVA 952 Sbjct: 892 951 Query: 953 DKDKAEAVELMKGFHAMGYKII 974 Sbjct: 952 973 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 75,378,518 Number of extensions: 3324282 Number of successful extensions: 11415 Number of sequences better than 1.0e-05: 60 Number of HSP's gapped: 11136 Number of HSP's successfully gapped: 89 Length of query: 1073 Length of database: 38,378,431 Length adjustment: 117 Effective length of query: 956 Effective length of database: 24,884,353 Effective search space: 23789441468 Effective search space used: 23789441468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)