BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0263.0001.p (227 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin2964 [R] COG0637 Predicted phosphatase/phosphohexomutase 184 9e-47 BS_yvdM [R] COG0637 Predicted phosphatase/phosphohexomutase 181 1e-45 ycjU [R] COG0637 Predicted phosphatase/phosphohexomutase 162 3e-40 ZycjU [R] COG0637 Predicted phosphatase/phosphohexomutase 162 3e-40 >lin2964 [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 184 bits (467), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 8/211 (3%), Positives = 31/211 (14%), Gaps = 2/211 (0%) Query: 1 LSTFPQAVIFDLDGVLTDTAEFHYLAWKQLGAELGIEVDKALNEQLKGVSRLQSLERIXX 60 + L + A ++ A L V+ + + Sbjct: 1 MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPE 60 Query: 61 XXXXXXXXTAEEMEHLAAQKNAHYTALIASVTPNDILPGIXXXXXXXXXXXXXXXVGSAS 120 + +++ + ++ + N+ Sbjct: 61 TQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKR 120 Query: 121 RNAPFVLERLGLDSAFDYVVDAGRIQRGKPDPETFTNAADYLKVPYESCIGVEDAAAGVE 180 ++ + + G Sbjct: 121 LQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSN 180 Query: 181 AIKRAGMFAVGIGSAQTLRQADYLVTATELL 211 M + + + Sbjct: 181 ETAFGVMRYLHLADK--HDLPRIVTIQNPYS 209 >BS_yvdM [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 181 bits (458), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 14/218 (6%), Positives = 33/218 (15%) Query: 6 QAVIFDLDGVLTDTAEFHYLAWKQLGAELGIEVDKALNEQLKGVSRLQSLERIXXXXXXX 65 Q + T + + + +E + Sbjct: 2 QYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPET 61 Query: 66 XXXTAEEMEHLAAQKNAHYTALIASVTPNDILPGIXXXXXXXXXXXXXXXVGSASRNAPF 125 T + + A+ + +IAS Sbjct: 62 QGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRL 121 Query: 126 VLERLGLDSAFDYVVDAGRIQRGKPDPETFTNAADYLKVPYESCIGVEDAAAGVEAIKRA 185 + L L + A L + Sbjct: 122 QTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNE 181 Query: 186 GMFAVGIGSAQTLRQADYLVTATELLSAEHILAAYDRW 223 F V + + + + + Sbjct: 182 TAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVGL 219 >ycjU [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 10/207 (4%), Positives = 32/207 (15%), Gaps = 2/207 (0%) Query: 6 QAVIFDLDGVLTDTAEFHYLAWKQLGAELGIEVDKALNEQLKGVSRLQSLERIXXXXXXX 65 + V T + A+ ++D A+ + + + + Sbjct: 4 HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQG 63 Query: 66 XXXTAEEMEHLAAQKNAHYTALIASVTPNDILPGIXXXXXXXXXXXXXXXVGSASRNAPF 125 T P+ + + + Sbjct: 64 LTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQT 123 Query: 126 VLERLGLDSAFDYVVDAGRIQRGKPDPETFTNAADYLKVPYESCIGVEDAAAGVEAIKRA 185 L + + + + A Sbjct: 124 DYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETA 183 Query: 186 GMFAVGIGSAQTLRQADYLVTATELLS 212 + A + + + Sbjct: 184 FGVMRYLHLA--DKHDLPRIVTIQNPY 208 >ZycjU [R] COG0637 Predicted phosphatase/phosphohexomutase Length = 346 Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 10/207 (4%), Positives = 32/207 (15%), Gaps = 2/207 (0%) Query: 6 QAVIFDLDGVLTDTAEFHYLAWKQLGAELGIEVDKALNEQLKGVSRLQSLERIXXXXXXX 65 + V T + A+ ++D A+ + + + + Sbjct: 4 HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQG 63 Query: 66 XXXTAEEMEHLAAQKNAHYTALIASVTPNDILPGIXXXXXXXXXXXXXXXVGSASRNAPF 125 T P+ + + + Sbjct: 64 LTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQT 123 Query: 126 VLERLGLDSAFDYVVDAGRIQRGKPDPETFTNAADYLKVPYESCIGVEDAAAGVEAIKRA 185 L + + + + A Sbjct: 124 DYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETA 183 Query: 186 GMFAVGIGSAQTLRQADYLVTATELLS 212 + A + + + Sbjct: 184 FGVMRYLHLA--DKHDLPRIVTIQNPY 208 Score = 160 bits (405), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 10/215 (4%), Positives = 34/215 (15%), Gaps = 2/215 (0%) Query: 6 QAVIFDLDGVLTDTAEFHYLAWKQLGAELGIEVDKALNEQLKGVSRLQSLERIXXXXXXX 65 + V T + A+ ++D A+ + + + + Sbjct: 4 HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQG 63 Query: 66 XXXTAEEMEHLAAQKNAHYTALIASVTPNDILPGIXXXXXXXXXXXXXXXVGSASRNAPF 125 T P+ + + + Sbjct: 64 LTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQT 123 Query: 126 VLERLGLDSAFDYVVDAGRIQRGKPDPETFTNAADYLKVPYESCIGVEDAAAGVEAIKRA 185 L + + + + A Sbjct: 124 DYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETA 183 Query: 186 GMFAVGIGSAQTLRQADYLVTATELLSAEHILAAY 220 + A + + + + + Sbjct: 184 FGVMRYLHLA--DKHDLPRIVTIQNPYSLLNRSFE 216 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 14,692,100 Number of extensions: 542609 Number of successful extensions: 1165 Number of sequences better than 1.0e-05: 36 Number of HSP's gapped: 1151 Number of HSP's successfully gapped: 36 Length of query: 227 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 124 Effective length of database: 26,499,029 Effective search space: 3285879596 Effective search space used: 3285879596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)